New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 261469857 (0.920)3 (0.050) 3/250 NT 5.3% coding (3637/4710 nt) PP_2287 internal core protein
?NC_002947 = 2614737 54 (0.930)coding (3676/4710 nt) PP_2287 internal core protein

CTATCGCAGATCACTGGGTCCATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTCCTGGATTACACCGGCAT  >  NC_002947/2614599‑2614885
                                                                                                                                          |                                                                                                                                                    
cTATCGCAGATCACTGGGGCCATGGGCTGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGGGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGa                                                                                                                                            <  7:202362/149‑1 (MQ=255)
      cAGATCACTGGGTCCATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGt                                                                                                                                      <  8:187400/149‑1 (MQ=255)
        gATCACTGGGTCCATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTgg                                                                                                                                    <  4:77535/149‑1 (MQ=255)
         aTCACTGGGTCCATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGc                                                                                                                                   <  2:35279/149‑1 (MQ=255)
            aCTGGGTCCATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCg                                                                                                                                >  6:338363/1‑149 (MQ=255)
                ggTCCATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGcc                                                                                                                              <  4:194727/147‑1 (MQ=255)
                ggTCCATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCt                                                                                                                             >  1:307768/1‑148 (MQ=255)
                    cATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAAt                                                                                                                         <  2:307768/148‑1 (MQ=255)
                     aTGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAAttt                                                                                                                       <  4:301364/149‑1 (MQ=255)
                     aTGGGATGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTACCGGGGCTGACTACGTGGCCCGCCTGAAttt                                                                                                                       >  8:330456/1‑148 (MQ=255)
                      tGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAAttt                                                                                                                       >  4:108308/1‑148 (MQ=255)
                        ggATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAg                                                                                                                    >  7:184444/1‑149 (MQ=255)
                            ggAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACTGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACATTCGGAGGTGCCGGGGCTGa                                                                                                                                            <  4:106375/121‑1 (MQ=255)
                            ggAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACTGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGa                                                                                                                                            >  3:106375/1‑121 (MQ=255)
                             gAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGcc                                                                                                                >  8:182118/1‑148 (MQ=255)
                                      gcTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGAtt                                                                                                      <  2:370635/149‑1 (MQ=255)
                                       ctacAGGCCGTTCCCACTCTCCGAGCATTGCGCCGTGACATCGCCACCTGCAAAGCCCCGGATGACATCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCAGCCTGAAGTTCAGAGCCAAGGACGATTg                                                                                                     >  4:263240/4‑149 (MQ=255)
                                       cTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTg                                                                                                     >  1:255153/1‑149 (MQ=255)
                                                    ccACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAAc                                                                                        >  3:322093/1‑149 (MQ=255)
                                                     cACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGCGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCACTGACGATTGGGTCCGCCATAACg                                                                                       >  8:154066/1‑149 (MQ=255)
                                                      aCTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACgg                                                                                      <  3:106897/149‑1 (MQ=255)
                                                       ctctCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGt                                                                                     <  5:75742/149‑1 (MQ=255)
                                                            cgcgCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGa                                                                                   <  3:108308/146‑1 (MQ=255)
                                                                  ttGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGtt                                                                          <  5:338363/149‑1 (MQ=255)
                                                                    gcgcCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTc                                                                         <  4:322093/148‑1 (MQ=255)
                                                                     cgcCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGATAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCaa                                                                       <  4:154515/149‑1 (MQ=255)
                                                                       ccGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAAcc                                                                     <  3:32499/149‑1 (MQ=255)
                                                                          tGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGc                                                                   >  2:371134/1‑148 (MQ=255)
                                                                               tCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCa                                                                                                               <  7:331090/99‑1 (MQ=255)
                                                                               tCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCa                                                                                                               >  8:331090/1‑99 (MQ=255)
                                                                               tCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTg                                                             >  6:68563/1‑149 (MQ=255)
                                                                                  ccACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGAt                                                          >  5:113394/1‑149 (MQ=255)
                                                                                   cACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGccggggctttgccggtggcgatgtcacggcgcaatgcgcggagagtgggcacggcctggagcgcggccttccatc                                                                           >  3:94059‑M2/1‑56 (MQ=255)
                                                                                   cACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGccggggctttgccggtggcgatgtcacggcgcaatgcgcggagagtgggcacggcctggagcgcggccttccatc                                                                           <  4:94059‑M2/131‑76 (MQ=255)
                                                                                    aCCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGc                                                        >  8:48350/1‑149 (MQ=255)
                                                                                     ccGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGcc                                                       <  8:184444/149‑1 (MQ=255)
                                                                                        gCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAAttt                                                                                                                       >  3:294887/1‑82 (MQ=255)
                                                                                        gCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAAttt                                                                                                                       <  4:294887/82‑1 (MQ=255)
                                                                                               cccGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGccggggctttgccggtggcgatgtcacggcgcaatgcgcggagagtgggcacggcctggagcgcggccttccatcccatggacccagtgatctgcgatagctcg                                              <  5:301905‑M2/148‑105 (MQ=255)
                                                                                                ccGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATgg                                            >  5:263584/1‑149 (MQ=255)
                                                                                                ccGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATgg                                            >  7:272991/1‑149 (MQ=255)
                                                                                                   gATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCaa                                                                 >  6:271647/1‑125 (MQ=255)
                                                                                                   gATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCaa                                                                 <  5:271647/125‑1 (MQ=255)
                                                                                                        cctcctGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTATGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGa                                                           >  1:356305/1‑126 (MQ=255)
                                                                                                        cctcctGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTATGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGa                                                           <  2:356305/126‑1 (MQ=255)
                                                                                                         ctcctGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCaa                                   <  5:68563/149‑1 (MQ=255)
                                                                                                          tcctGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAg                                  <  2:255153/149‑1 (MQ=255)
                                                                                                               gACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGc                             <  6:263584/149‑1 (MQ=255)
                                                                                                                accaccTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGc                             >  1:389764/1‑148 (MQ=255)
                                                                                                                      tGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACg                                                                                       >  6:720/1‑84 (MQ=255)
                                                                                                                      tGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACg                                                                                       <  5:720/84‑1 (MQ=255)
                                                                                                                      tGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGc                      >  1:176974/1‑149 (MQ=255)
                                                                                                                        gagaACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGt                    >  3:310317/1‑149 (MQ=255)
                                                                                                                         agaACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGTTCCGCCATAACGGTGAGACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTc                   <  7:249650/149‑1 (MQ=255)
                                                                                                                            acacAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTCCTg                <  1:50922/149‑1 (MQ=255)
                                                                                                                                aaTCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACg                                                                                       <  1:377681/74‑1 (MQ=255)
                                                                                                                                aaTCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACg                                                                                       >  2:377681/1‑74 (MQ=255)
                                                                                                                                aaTCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTCCTGGAtt            <  1:371134/149‑1 (MQ=255)
                                                                                                                                aaTCGGAGGTGCCGGCGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTCCTGGAtt            <  6:330844/149‑1 (MQ=255)
                                                                                                                                  tCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTCCTGGATGac          >  2:353198/1‑149 (MQ=255)
                                                                                                                                    ggacgggCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTCCTGGATTacac        <  2:45677/143‑1 (MQ=255)
                                                                                                                                          gCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTCCTGGATTACACCGGCAt  >  8:274082/1‑149 (MQ=255)
                                                                                                                                          |                                                                                                                                                    
CTATCGCAGATCACTGGGTCCATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTCCTGGATTACACCGGCAT  >  NC_002947/2614599‑2614885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.