New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2614698 | 57 (0.920) | 3 (0.050) | 3/250 | NT | 5.3% | coding (3637/4710 nt) | PP_2287 | internal core protein |
? | NC_002947 | = 2614737 | 54 (0.930) | coding (3676/4710 nt) | PP_2287 | internal core protein |
CTATCGCAGATCACTGGGTCCATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTCCTGGATTACACCGGCAT > NC_002947/2614599‑2614885 | cTATCGCAGATCACTGGGGCCATGGGCTGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGGGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGa < 7:202362/149‑1 (MQ=255) cAGATCACTGGGTCCATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGt < 8:187400/149‑1 (MQ=255) gATCACTGGGTCCATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTgg < 4:77535/149‑1 (MQ=255) aTCACTGGGTCCATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGc < 2:35279/149‑1 (MQ=255) aCTGGGTCCATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCg > 6:338363/1‑149 (MQ=255) ggTCCATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGcc < 4:194727/147‑1 (MQ=255) ggTCCATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCt > 1:307768/1‑148 (MQ=255) cATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAAt < 2:307768/148‑1 (MQ=255) aTGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAAttt < 4:301364/149‑1 (MQ=255) aTGGGAT‑GAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTACCGGGGCTGACTACGTGGCCCGCCTGAAttt > 8:330456/1‑148 (MQ=255) tGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAAttt > 4:108308/1‑148 (MQ=255) ggATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAg > 7:184444/1‑149 (MQ=255) ggAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACTGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACATTCGGAGGTGCCGGGGCTGa < 4:106375/121‑1 (MQ=255) ggAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACTGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGa > 3:106375/1‑121 (MQ=255) gAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGcc > 8:182118/1‑148 (MQ=255) gcTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGAtt < 2:370635/149‑1 (MQ=255) ctacAGGCCGTTCCCACTCTCCGAGCATTGCGCCGTGACATCGCCACCTGCAAAGCCCCGGATGACATCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCAGCCTGAAGTTCAGAGCCAAGGACGATTg > 4:263240/4‑149 (MQ=255) cTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTg > 1:255153/1‑149 (MQ=255) ccACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAAc > 3:322093/1‑149 (MQ=255) cACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGCGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCACTGACGATTGGGTCCGCCATAACg > 8:154066/1‑149 (MQ=255) aCTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACgg < 3:106897/149‑1 (MQ=255) ctctCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGt < 5:75742/149‑1 (MQ=255) cgcgCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGa < 3:108308/146‑1 (MQ=255) ttGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGtt < 5:338363/149‑1 (MQ=255) gcgcCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTc < 4:322093/148‑1 (MQ=255) cgcCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGATAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCaa < 4:154515/149‑1 (MQ=255) ccGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAAcc < 3:32499/149‑1 (MQ=255) tGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGc > 2:371134/1‑148 (MQ=255) tCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCa < 7:331090/99‑1 (MQ=255) tCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCa > 8:331090/1‑99 (MQ=255) tCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTg > 6:68563/1‑149 (MQ=255) ccACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGAt > 5:113394/1‑149 (MQ=255) cACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGccggggctttgccggtggcgatgtcacggcgcaatgcgcggagagtgggcacggcctggagcgcggccttccatc > 3:94059‑M2/1‑56 (MQ=255) cACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGccggggctttgccggtggcgatgtcacggcgcaatgcgcggagagtgggcacggcctggagcgcggccttccatc < 4:94059‑M2/131‑76 (MQ=255) aCCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGc > 8:48350/1‑149 (MQ=255) ccGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGcc < 8:184444/149‑1 (MQ=255) gCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAAttt > 3:294887/1‑82 (MQ=255) gCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAAttt < 4:294887/82‑1 (MQ=255) cccGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGccggggctttgccggtggcgatgtcacggcgcaatgcgcggagagtgggcacggcctggagcgcggccttccatcccatggacccagtgatctgcgatagctcg < 5:301905‑M2/148‑105 (MQ=255) ccGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATgg > 5:263584/1‑149 (MQ=255) ccGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATgg > 7:272991/1‑149 (MQ=255) gATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCaa > 6:271647/1‑125 (MQ=255) gATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCaa < 5:271647/125‑1 (MQ=255) cctcctGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTATGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGa > 1:356305/1‑126 (MQ=255) cctcctGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTATGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGa < 2:356305/126‑1 (MQ=255) ctcctGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCaa < 5:68563/149‑1 (MQ=255) tcctGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAg < 2:255153/149‑1 (MQ=255) gACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGc < 6:263584/149‑1 (MQ=255) accaccTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGc > 1:389764/1‑148 (MQ=255) tGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACg > 6:720/1‑84 (MQ=255) tGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACg < 5:720/84‑1 (MQ=255) tGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGc > 1:176974/1‑149 (MQ=255) gagaACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGt > 3:310317/1‑149 (MQ=255) agaACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGTTCCGCCATAACGGTGAGACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTc < 7:249650/149‑1 (MQ=255) acacAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTCCTg < 1:50922/149‑1 (MQ=255) aaTCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACg < 1:377681/74‑1 (MQ=255) aaTCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACg > 2:377681/1‑74 (MQ=255) aaTCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTCCTGGAtt < 1:371134/149‑1 (MQ=255) aaTCGGAGGTGCCGGCGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTCCTGGAtt < 6:330844/149‑1 (MQ=255) tCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTCCTGGATGac > 2:353198/1‑149 (MQ=255) ggacgggCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTCCTGGATTacac < 2:45677/143‑1 (MQ=255) gCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTCCTGGATTACACCGGCAt > 8:274082/1‑149 (MQ=255) | CTATCGCAGATCACTGGGTCCATGGGATGGAAGGCCGCGCTCCAGGCCGTGCCCACTCTCCGCGCATTGCGCCGTGACATCGCCACCGGCAAAGCCCCGGATGACCTCCTGGACCACCTGGAGAACACAATCGGAGGTGCCGGGGCTGACTACGTGGCCCGCCTGAATTTCAGCGCCAAGGACGATTGGGTCCGCCATAACGGTGACACCGCGTTCAACCGCAAGCTGGATGCCGTGGACAATGGGCTACGCAAGGTCGCCAAAGGCGTCCTGGATTACACCGGCAT > NC_002947/2614599‑2614885 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |