New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2711961 =	57 (0.920)	3 (0.050)	3/254	NT	5.7%	coding (3143/3708 nt)	metH	cobalamin‑dependent methionine synthase
	?	NC_002947	2712007 =	44 (0.740)					coding (3097/3708 nt)	metH	cobalamin‑dependent methionine synthase

CTGGTAAGCCTTGGCCACTTCCTCGGCACCGATGCCGGCGGTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCGAATACCGCGCGAGCGCTGATCAGCTTCTCATCGATCAGCTTGTCGAGCAT  >  NC_002947/2711861‑2712145                                                                                                                                                   |                                                                                                                                           cTGGTAAGCCTTGGCCACTTCCTCGGCACCGATGCCGGCGGTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGgcgc                                                                                                                                           <  4:324785/148‑1 (MQ=255) cTGGTAAGCCTTGGCCACTTCCTCGGCACCGATGCCGGCGGTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGgcg                                                                                                                                            >  3:198800/1‑147 (MQ=255)  gcgcggtattcggcttctggccggccaaccaggtggacgatgacgacatcgaagtctacggcgaagacggccaggcactggccaccctgcatcacctgcGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCa                                                                                                                                          >  2:234435‑M1/100‑148 (MQ=255)     tAAGCCTTGGCCACTTCCTCGGCACCGATGCCGGCGGTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTg                                                                                                                                      <  7:149870/149‑1 (MQ=255)       aGCCTTGGCCACTTCCTCGGCACCGATGCCGGCGGTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGAt                                                                                                                                    >  1:208593/1‑149 (MQ=255)         ccTTGGCCACTTCCTCGGCACCGATGCCGGCGGTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCTGTCCGGCTTGATGGTCTGCTGGCACAGGTGATGc                                                                                                                                  <  6:393218/149‑1 (MQ=255)           ttGGCCACTTCCTCGGCACCGATGCCGGCGGTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAg                                                                                                                                >  2:115910/1‑149 (MQ=255)            cggcttctggccggccaagcaggtggacgatgacgacatcgaagtctacggcgaagacggccaggcactggccaccctgcatcacctgcGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAg                                                                                                                                         <  8:152647‑M1/50‑1 (MQ=255)            cggcttctggccggccaaccaggtggacgatgacgacatcgaagtctacggcgaagacggccaggcactggccaccctgcatcacctgcGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAg                                                                                                                                         >  7:152647‑M1/90‑139 (MQ=255)              gCCACTTCCTCGGCACCGATGCCGGCGGTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGt                                                                                                                             <  1:115910/149‑1 (MQ=255)                      cTCGGCACCGATGCCGGCGGTGGTGATGACACCACCTACGTCGTCGGTAACGCCACTGGCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCGTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGt                                                                                                                      <  4:108082/148‑1 (MQ=255)                      cTCGGCACCGATGCCGGCGGTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTg                                                                                                                     >  4:115099/1‑149 (MQ=255)                       tCGGCACCGATGCCGGCGGTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGt                                                                                                                      >  6:257335/1‑147 (MQ=255)                       tCGGCACCGATGCCGGCGGTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGt                                                                                                                      <  5:257335/147‑1 (MQ=255)                               gATGCCGGCGGTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGt                                                                                                            >  4:40648/1‑149 (MQ=255)                                 tGCCGGCGGTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCt                                                                                                          <  3:40648/149‑1 (MQ=255)                                   ccGGCGGTGGTGATGAAACCAGGTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTACTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCtt                                                                                                         <  4:282630/148‑1 (MQ=255)                                    cggcggTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCg                                                                                                       <  2:208593/149‑1 (MQ=255)                                    cggcggTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATCCAGGGTGGCCAGTGCCTGGCCGTCTTCg                                                                                                       <  1:217261/149‑1 (MQ=255)                                      gcggTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGcc                                                                                                     >  4:29880/1‑149 (MQ=255)                                         gtggtcATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTa                                                                                                  <  8:314745/149‑1 (MQ=255)                                          tggtgATGAAACCACCTACGTAGTCGGTAACGCCACAGTCTTTCGGAGCGAAGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGACTCCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCg                                                                                                    >  7:94969/1‑146 (MQ=255)                                              gatgaAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACtt                                                                                             >  1:47314/1‑149 (MQ=255)                                                   aaCCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATg                                                                                        >  5:215731/1‑149 (MQ=255)                                                    accaccTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATgt                                                                                       >  4:226719/1‑149 (MQ=255)                                                     ccaccTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATgtc                                                                                      <  5:287836/149‑1 (MQ=255)                                                            cGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATc                                                                                <  3:322929/148‑1 (MQ=255)                                                                 tCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCAc                                                                          >  3:114644/1‑149 (MQ=255)                                                                      aaCGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGAt                                                                                         >  4:338698/1‑129 (MQ=255)                                                                         gCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTgg                                                                  >  2:182402/1‑149 (MQ=255)                                                                         gCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGACCGTCTTCGCCATAGACTTCGATGTCGTCATCGTCCACCTGGTTgg                                                                  >  1:130007/1‑149 (MQ=255)                                                                            aCTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTggccg                                                               <  6:215731/149‑1 (MQ=255)                                                                            aCTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTggccg                                                               <  2:47314/149‑1 (MQ=255)                                                                                tCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTggccggc                                                             <  6:183170/147‑1 (MQ=255)                                                                                tCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTggccggc                                                             <  3:115099/147‑1 (MQ=255)                                                                                           gacgaAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTa                                                                                                  <  5:367316/99‑1 (MQ=255)                                                                                           gacgaAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTa                                                                                                  >  6:367316/1‑99 (MQ=255)                                                                                            acgaAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCCGCTTGATCGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTACGATGTCCTCATCGTCCACCTGGTTGGCCGCCCAGAAGCTGatcag                                               >  8:26908/1‑145 (MQ=255)                                                                                                aGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATCGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCGAATACcgcg                                           >  3:313116/1‑149 (MQ=255)                                                                                                 ctgcgccagcagaccatcaagccggacggcaagcccaactggtcgctggcGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCg                                                    >  7:152647‑M2/51‑139 (MQ=255)                                                                                                 ctgcgccagcagaccatcaagccggacggcaagcccaactggtcgctggcGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGCTTGGCCGGCCAGAAGCCg                                                    <  8:152647‑M2/89‑1 (MQ=255)                                                                                                  tgcgccagcagaccatcaagccggacggcaagcccaactggtcgctggcGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCGAATACcgcgc                                          >  2:234435‑M2/50‑148 (MQ=255)                                                                                                     GCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCGAATACCGCGCGAgc                                      >  3:226719‑M1/1‑149 (MQ=255)                                                                                                      CCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCGAATACCGCGCGAgcg                                     <  2:33292‑M1/149‑1 (MQ=255)                                                                                                         GCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCGAATACCGCGCGAGCGCTg                                  <  2:256986‑M1/149‑1 (MQ=255)                                                                                                             ccAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCGAATACCGCGCGAGCGCTGAt                                >  4:233029/1‑147 (MQ=255)                                                                                                                 ttGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCGAATACCGCGCGAGCGCTGATCAGCtt                          >  4:328730/1‑149 (MQ=255)                                                                                                                      cTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCGAATACCGCGCGAGCGCTGATCAGCTTCTCAt                     >  5:201418/1‑149 (MQ=255)                                                                                                                      cTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCATAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCTGATCAGCGCTCGCGCGGTATTCGGCTtctggc                     <  2:130007/149‑4 (MQ=37)                                                                                                                                ggCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCGAATACCGCGCGAGCGCTGATCAGCTTCTCATCGATCAGCtt           >  7:5798/1‑149 (MQ=255)                                                                                                                                 gCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCGAATACCGCGCGAGCGCTGATCAGCTTCTCATCGATCAGCTTg          >  2:50444/1‑149 (MQ=255)                                                                                                                                   ttGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCGAATACCGCGCGAGCGCTGATCAGCTTCTCATCGATCAGCTTGTc        >  7:151764/1‑149 (MQ=255)                                                                                                                                   ttGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCGAATACCGCGCGAGCGCTGATCAGCTTCTCATCGATCAGCTTGTc        <  8:151764/149‑1 (MQ=255)                                                                                                                                     gATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCGAATACCGCGCGAGCGCTGATCAGCTTCTCATCGATCAGCTTGTCg       <  6:35114/148‑1 (MQ=255)                                                                                                                                       tGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACGTGGTTGGCCGGCCAGAAGCCGAATACCGCGCGAGCGCTGGTCAGCTTCTCATCGATCAGCTTGTCGAGc    <  1:256986/149‑1 (MQ=255)                                                                                                                                         gTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCGAATACCGCGCGAGCGCTGCTCAGCTTCTCATCGATCAGCTTGTCGAGCAt  >  8:106393/1‑149 (MQ=255)                                                                                                                                                   gcAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTggccggc                                                             <  6:18675/80‑1 (MQ=255)                                                                                                                                                   gcAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTggccggc                                                             >  5:18675/1‑80 (MQ=255)                                                                                                                                                   |                                                                                                                                           CTGGTAAGCCTTGGCCACTTCCTCGGCACCGATGCCGGCGGTGGTGATGAAACCACCTACGTAGTCGGTAACGCCACTGTCTTTCGGTGCGACGAAGTCGGCCAGCGACCAGTTGGGCTTGCCGTCCGGCTTGATGGTCTGCTGGCGCAGGTGATGCAGGGTGGCCAGTGCCTGGCCGTCTTCGCCGTAGACTTCGATGTCGTCATCGTCCACCTGGTTGGCCGGCCAGAAGCCGAATACCGCGCGAGCGCTGATCAGCTTCTCATCGATCAGCTTGTCGAGCAT  >  NC_002947/2711861‑2712145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.