New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3522999 =	NA (NA)	4 (0.070)	3/250	NT	NA	coding (90/360 nt)	PP_3113	transposase
	?	NC_002947	3523034 =	NA (NA)					coding (125/360 nt)	PP_3113	transposase

GAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACCCCAAGCCCGTCGACTTTCGAAAATCCATCGATGGCCTGGCCGCGCTGGTCGAACTCGATATCAAGGTGGCGGTGTTCGACCCAGTGCTTT  >  NC_002947/3522897‑3523042                                                                                                                                          |         gatcTCGACGAGCATGATGCGACCCGAGTCAAATGTCGAAAAAGTGTACGTCTACACCAAGAGCGTCGACTTTCGAAAATCCATCGATGGCCTGGCCGAGCTTTTCGATCTCGATATCAAGGTGGGGGTGTTCGACCCAGTGCttt  <  5:52045/143‑1 (MQ=1)                                                                                                                                          |         GAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACCCCAAGCCCGTCGACTTTCGAAAATCCATCGATGGCCTGGCCGCGCTGGTCGAACTCGATATCAAGGTGGCGGTGTTCGACCCAGTGCTTT  >  NC_002947/3522897‑3523042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.