New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6000903 =	18 (0.290)	3 (0.060)	3/206	NT	18.8%	intergenic (+10/+99)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	6000997 =	12 (0.250)					intergenic (+104/+5)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase

GCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCAGGAA  >  NC_002947/6000849‑6001145                                                                                                                                                      |                                                                                                                                                     gCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCGTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGCGGGCTG‑TGGTCAACCTTTAGGAGCGGGTTTACCCGCGAAGAGGCCa                                                                                                                                                      <  8:195765/149‑1 (MQ=255)        tcaaGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGACCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACtt                                                                                                                                                >  1:86775/1‑148 (MQ=255)           tgaagGGTGGCTTCCTGTTTTGTTTGCACATGTTAGCCTGTGCCGGCCTATTCGCGGTTAAACGCGCTCCTTCTAGTATTGCAGCGCCTGAGAGGGGTG‑TGGTGAACGTGTAGGAGCGGGTTTACCCGGGAAGAGGCCAGTACTTacaa                                                                                                                                            <  8:204987/148‑1 (MQ=25)                cgTGGCTTCCTGCGTTGGTTCCACAAGTGAGCCTGTGCCGGCCTCTACGCGTGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTTAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTacaacacaa                                                                                                                                       <  5:70689/148‑1 (MQ=38)                      ttCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTTAACCCGCTCCTTCATGTTGTGCACCGGCTGAGAGGGGTG‑TGGTGTACCTGTAGGAGCGGGTTTAGACGCGAAGAGGGCAGTACTTACCACCCAACACTcc                                                                                                                                 >  5:185172/1‑148 (MQ=37)                                  ttgCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTTAACCCCCGCCGAAAAATAGTGGCCCCCCGGAGCGGGGTG‑TGGTGGACCGGTTGGGGCGGGTTTACCCCCGAAGAGGGCCCGAATTAAAACACAACCCACAGGCACAGCCCcg                                                                                                                     >  4:131989/1‑149 (MQ=255)                                                             TTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACGGCGAAAAACCGGACTc                                                                                            >  2:86775‑M1/1‑147 (MQ=255)                                                             TTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCa                                                                                           <  7:364274‑M1/148‑1 (MQ=255)                                                                  GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACAAAACCCTCATGCACTGCCACGCGTGGTACAGCGAAAAAACGGACTAATAGAAc                                                                                     <  7:300775‑M1/149‑1 (MQ=255)                                                                        ACCCGCTCCTACAAGTAGTCCACCGCCTGAGAGGGCTG‑TGGTTAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTc                                                                               >  3:131989‑M1/1‑149 (MQ=255)                                                                         CCCGCTCCTACAAGTAGTGCACCGCGTTAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTcc                                                                              >  3:83594‑M1/1‑149 (MQ=255)                                                                         CCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAACGAAAAACCGGACTCATAGAACGCTGTcc                                                                              <  3:347731‑M1/149‑1 (MQ=255)                                                                          CCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCcgc                                                                                                                    <  1:279101‑M1/110‑1 (MQ=255)                                                                          CCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCcgc                                                                                                                    >  2:279101‑M1/1‑110 (MQ=255)                                                                            cgctcctacaggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCg                                                                             >  5:137520‑M2/75‑148 (MQ=255)                                                                             gctcctacaggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGc                                                                                                          <  3:364445‑M2/45‑1 (MQ=255)                                                                             gctcctacaggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGc                                                                                                          >  4:364445‑M2/74‑118 (MQ=255)                                                                                CTACAAGTAGTGCACCGCCTGAGAGGGCTGGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGc                                                                         <  1:28620‑M1/148‑1 (MQ=255)                                                                                  ACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAg                                                                     <  3:167871‑M1/149‑1 (MQ=255)                                                                                    AAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGc                                                                   <  7:276152‑M1/149‑1 (MQ=255)                                                                                    AAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGc                                                                   <  8:349037‑M1/149‑1 (MQ=255)                                                                                             aCCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTcaca                                                          >  5:97882/1‑149 (MQ=255)                                                                                                 ccTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGc                                                      >  1:322947/1‑149 (MQ=255)                                                                                                       agGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCAGCAGCGAAGGCGCGCTCACACCGCTCATCg                                                >  5:142391/1‑149 (MQ=255)                                                                                                         ggCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGc                                              <  6:142391/149‑1 (MQ=255)                                                                                                         ggCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGc                                              <  6:97882/149‑1 (MQ=255)                                                                                                                 gtgAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACg                                       >  5:102024/1‑149 (MQ=255)                                                                                                                  tgAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACg                                       >  4:336346/1‑148 (MQ=255)                                                                                                                   gAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACgg                                      >  1:7857/1‑148 (MQ=255)                                                                                                                    aaCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGa                                     <  8:364274/148‑1 (MQ=255)                                                                                                                                 gggtttacccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTc                       <  8:276152‑M2/128‑1 (MQ=255)                                                                                                                                   gtttacccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCg                     >  2:242511‑M2/20‑149 (MQ=255)                                                                                                                                             gaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAACGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCtt           <  4:347731‑M2/140‑1 (MQ=255)                                                                                                                                               agaggccAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATc                                  <  7:213717‑M2/117‑1 (MQ=255)                                                                                                                                               agaggccAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATc                                  >  8:213717‑M2/8‑124 (MQ=255)                                                                                                                                               agaggccAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGa         <  2:7857‑M2/142‑1 (MQ=255)                                                                                                                                                   gccAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGTCTGTCCGCCTCGCCCTTGAGCAg     <  7:349037‑M2/146‑1 (MQ=255)                                                                                                                                                    ccAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCAgg    <  4:167871‑M2/147‑1 (MQ=255)                                                                                                                                                      aGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCCCACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCGTCGCCCTTGAGCAGGaa  >  8:168235/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCAGGAA  >  NC_002947/6000849‑6001145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.