Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	6098337	6098491	155	27 [25]	[25] 26	PP_5350	RpiR family transcriptional regulator

TCTTCATGCACGTCGATCGCCAGGTTGACCGTCGATAGCTCGGCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAG  >  NC_002947/6098400‑6098639                                                                                             |                                                                                                                                                      tCTTCATGCACGTCGATCGCCAGGTTGACCGTCGATAGCTCGGCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGa                                                                                                         >  4:166667/1‑137 (MQ=255) tCTTCATGCACGTCGATCGCCAGGTTGACCGTCGATAGCTCGGCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGa                                                                                                         <  3:166667/137‑1 (MQ=255)   ttCATGCACGTCGATCGCCAGGTTGACCGTCGATAGCTCGGCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATcagc                                                                                                                             <  4:153757/115‑1 (MQ=255)    tCATGCACGTCGATCGCCAGGTTGACCGTCGATAGCTCGGCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTgg                                                                                                     <  1:382582/138‑1 (MQ=255)    tCATGCACGTCGATCGCCAGGTTGACCGTCGATAGCTCGGCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTgg                                                                                                     >  2:382582/1‑138 (MQ=255)     cATGCACGTCGATCGCCAGGTTGACCGTCGATAGCTCGGCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑Cg                                                                                                                                                    >  3:202699/1‑91 (MQ=255)     cATGCACGTCGATCGCCAGGTTGACCGTCGATAGCTCGGCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑Cg                                                                                                                                                    <  4:202699/91‑1 (MQ=255)        gCACGTCGATCGCCAGGTTGACCGTCGATAGCTCGGCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGc                                                                                       >  2:319642/1‑148 (MQ=255)            gTCGATCGCCAGGTTGACCGTCGATAGCTCGGCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACAt                                                                                  >  5:176287/1‑149 (MQ=255)               gATCGCCAGGTTGACCGTCGATAGCTCGGCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGc                                                                               >  4:147318/1‑149 (MQ=255)                           gACCGTCGATAGCTCGGCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAgg                                                                    <  6:176287/148‑1 (MQ=255)                              cGTCGATAGCTCGGCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTaa                                                                >  5:39788/1‑149 (MQ=255)                               gTCGATAGCTCGGCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAg                                                                     <  6:2825/143‑1 (MQ=255)                               gTCGATAGCTCGGCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAg                                                                     >  5:2825/1‑143 (MQ=255)                                          ggCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCTGGTTGGCGCCGCTCTCAGCGAACCTCATCTAAATAATATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCGACa                                                       <  1:319642/148‑1 (MQ=255)                                                         gctggGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCGACATCGCTTGCATGTGGGGGt                                     >  2:279611/1‑149 (MQ=255)                                                          ctggGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGAACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTc                                    <  8:346205/149‑1 (MQ=255)                                                           tggGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTCg                                   >  2:40184/1‑149 (MQ=255)                                                            ggggCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTCg                                   <  1:40184/148‑1 (MQ=255)                                                             gggCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTCgg                                  >  6:152642/1‑148 (MQ=255)                                                                     ggTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTATCAGGGTAACGGCCGACATCGCTTGCATGGGGGGGGCGGAATACGCTg                         >  4:47482/1‑149 (MQ=255)                                                                                   cgccgcTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGagcag            >  6:141410/1‑148 (MQ=255)                                                                                    gccgcTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGagcag            >  7:56008/1‑147 (MQ=255)                                                                                         tctcA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCg      >  6:382141/1‑148 (MQ=255)                                                                                           tcA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCgg     >  5:6523/1‑147 (MQ=255)                                                                                             a‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGgaag  <  5:152642/148‑1 (MQ=255)                                                                                             |                                                                                                                                                      TCTTCATGCACGTCGATCGCCAGGTTGACCGTCGATAGCTCGGCCAGCGGCGTCTGGCTGGGGCACAGGGTAATCAGGTTGGCGCCGCTCTCA‑CGCACCAGGT‑TGGCAGTGATCAGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAG  >  NC_002947/6098400‑6098639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑