Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,950,973 | C→A | 14.1% | intergenic (‑123/+34) | fliL ← / ← fliK | flagellar protein FliL/flagellar hook‑length control protein FliK |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,950,973 | 0 | C | A | 14.1% | 118.5 / 9.8 | 48 | intergenic (‑123/+34) | fliL/fliK | flagellar protein FliL/flagellar hook‑length control protein FliK |
Reads supporting (aligned to +/- strand): ref base C (22/19); new base A (3/4); total (25/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.96e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAAAGGCCGGGCGCTATCGACCGCTTCGGCCCCACCCTGCTCGGCCCGGCGCGCCGCCACCCCG > NC_002947/4950825‑4951118 | tCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTc > 1:4398/1‑149 (MQ=255) tGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGc < 4:20574/147‑1 (MQ=255) cgtCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGGTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCGAGCCCGCga < 8:327475/145‑1 (MQ=255) cTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGTGCAAGTGTTATGCCAGATTTTGC‑AGGGGGTGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCGAGCCCGCgaa < 3:112439/148‑1 (MQ=255) cTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCgaa < 6:97643/148‑1 (MQ=255) cgcgCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCGAGCCCGCgaagaa < 4:92728/148‑1 (MQ=255) cGCTCTTCTCCTTGCCAATAATGCGTCGTCCATGGGGGGTTCAAAGGATACTGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGG‑AGGGGATGGATTCGAGCAGGTTTTGCGGTGCTGGCTTCTTCGCCGGCTCGGGCGCgaagaa < 2:241250/148‑1 (MQ=255) cGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTGCAAAGGACAATGGCTTGGCTTGTGCAATTTTTATGCCATATTTTGCGCGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCgaag < 1:112317/147‑1 (MQ=255) gCTCTTCGCCATGCCAATAATCCGGCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCGAGCCCGCGaagaag < 3:310906/148‑1 (MQ=255) cGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCGCGCCCGCGAAGAagccag < 2:141747/146‑1 (MQ=255) gCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGTATGGATTCCAGCAGGTTTTGAGGTGCTGGCTTCTTCGCGGGCTCGCGCGCGAAGCcgccagcc > 4:224571/1‑147 (MQ=255) gCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGcc > 1:333766/1‑148 (MQ=255) ccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTGATGCCAGATTTTGC‑ATGGGATGGATTCCCGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCaa > 8:161762/1‑149 (MQ=255) atCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTa > 1:317795/1‑149 (MQ=255) cgtcgtCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTAt > 4:281124/1‑147 (MQ=255) gtcttcCATCGGGGTTTCAATGGTGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGTTGTATTCCTGCAGGTTTTGCGGTGCTGGGTTCTGCGCGGGCTCGCCCGCGATGAAGCCAGCCCAGGCCAACAGTTATCAg < 2:331180/149‑1 (MQ=255) ccATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCgta < 3:292779/149‑1 (MQ=255) aTCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCCCCGGCTCGCCCCCGAACAACCCAGCCCACGCCAACAGTTATCAGGCgtag > 4:192619/1‑148 (MQ=255) aTCGGGGGTTCAAAGGAGAATGGCTTCGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGATTCTGAGCAGCCTCGCCCGCGAAGAAGCCAGCCAAGGCCAACAGAAATAAGGCgtag > 8:284036/1‑148 (MQ=255) ggggTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATc < 1:97634/149‑1 (MQ=255) tCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGGGAAGAAGCCAGCCCAGGCCAACAGTTTTAAGGCGTAGTAATCGAccc > 3:353391/1‑148 (MQ=255) gagaATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATAAGGCGTTGTAATCGTACGCACAGt > 1:184057/1‑149 (MQ=255) ggcttgAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAac < 2:4398/148‑1 (MQ=255) gtgtTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTc < 3:281124/149‑1 (MQ=255) gtgtTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTc < 2:317795/149‑1 (MQ=255) ttATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCa > 1:23188/1‑148 (MQ=255) ttATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCa > 5:304146/1‑148 (MQ=255) ccAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAAAGGcc > 7:194464/1‑149 (MQ=255) aGATTTTGC‑AGGGTATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAAAGGCCgg < 4:62095/149‑1 (MQ=255) ttGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTTTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAAAGGCCGGgcgc < 2:333766/148‑1 (MQ=255) atTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCaa < 6:71639/67‑1 (MQ=255) atTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCaa > 5:71639/1‑67 (MQ=255) ttCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAAAGGCCGGGCGCTATCGCCCGCTTCgg > 6:375898/1‑149 (MQ=255) agcagGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAAAGGCCGGGCGCTATCGAc > 6:9947/1‑137 (MQ=255) agcagGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAAAGGCCGGGCGCTATCGAc < 5:9947/137‑1 (MQ=255) gcagGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAAAGGCCGGGCGCTATCGACCGCTTCGGCCCCa > 3:357733/1‑149 (MQ=255) gcagGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAAAGGCCGGGCGCTATCGACCGCTTCGGCCCCa > 1:76726/1‑149 (MQ=255) cagGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGGCAGCCCAGGCCAACAGTTATCAGGc > 3:282884/1‑72 (MQ=255) cagGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGGCAGCCCAGGCCAACAGTTATCAGGc < 4:282884/72‑1 (MQ=255) gTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAAAGGCCGGGCGCTATCGACCGCTTCGGCCCCACCCt > 2:38684/1‑149 (MQ=255) ttttGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTACTCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAAAGGCCGTGCGCTATCGACCGCTTCGGCCCCACCCTg < 7:161762/149‑1 (MQ=255) gtttGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAAAGGCCGGGCGCTATCGACCGCTTCGGCCCCACCCTg < 3:320682/148‑1 (MQ=255) gggCTGGCTTCTTCGCGGGCGAGCCCGCGAAGCAGCCAGCCCAGGCCACCAGTTATCAGGGGTAGTAATCGACCGCACTGTCGCCGCCAACCACCTGCTGCTCCAAAGGCCGGGCGCTATCGACCGCTTCGGCCCCACCCTGCTCGGcc > 5:112286/3‑149 (MQ=39) ttcttcGCGGGCGAGCCCGCGAAGAAGCCAGCACAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAAAGGCCGGGCGCTATCGACCGCTTCGGCCCCACCCTGCTCGGCCCGgcgcgc > 1:38735/1‑149 (MQ=255) tcttcGCGGGCGAGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCCCCTGCTGCTCCAACGGCCGGGCGCTATCGACCGCTTCGGCCCCACCCTGCTCGGCCCGGCGcgcc > 6:229529/1‑149 (MQ=255) cttcGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAAAGGCCGGGCGCTATCGACCGCTTCGGCCCCACCCTGCTCGGCCCGGCGcgcc < 4:353391/148‑1 (MQ=255) ttcGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACCACCACCTGCTGCTCCAACGGCCGGGCGCTATCGACCGCTTCGGCCCCACCCTGCTCGGCCCGGCGcgccgc > 2:172956/1‑149 (MQ=255) ttcGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAAAGGCCGGGCGCTATCGACCGCTTCGGCCCCACCCTGCTCGGCCCGGCGcgccgc > 1:327824/1‑149 (MQ=255) cTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAACGGCCGGGCGCTATCGACCGCTTCGGCCCCACCCTGCTCGGCCCGGCGCGCCGCCACCCCg > 8:217390/1‑148 (MQ=255) | TCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGC‑AGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTTATCAGGCGTAGTAATCGACCGCACTGTCGCCGACAACCACCTGCTGCTCCAAAGGCCGGGCGCTATCGACCGCTTCGGCCCCACCCTGCTCGGCCCGGCGCGCCGCCACCCCG > NC_002947/4950825‑4951118 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |