| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,009,722 | T→G | 7.7% | intergenic (+82/‑90) | PP_4412 → / → PP_4413 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,009,722 | 0 | T | G | 7.7% | 221.2 / 7.8 | 75 | intergenic (+82/‑90) | PP_4412/PP_4413 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (33/36); new base G (2/4); total (35/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.96e-01 | |||||||||||
GCTCTGGGCAGCAGCAGGATTCAGACGATGAACCACCTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAACTCACTTCTTTGCCGCCTAGCCTTCTCTCTTGC > NC_002947/5009579‑5009870 | gCTCTGGGCAGCAGCAGGATTCAGCCGATGCACCACCTCCTCCAACCGGGGTACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑GGTCGTGACCCAAGACGC‑CGCCATA‑CGGCGAGCGGCTTg < 7:341000/148‑1 (MQ=255)gCTCTGGGCAGCAGCAGGATTCAGACGATGAACCACCTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTg < 2:139132/148‑1 (MQ=255)gCTCTGGGCAGCAGCAGGATTCAGACGATGAACCACCTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGACGC‑CGCCATA‑CGGCGAGCGGCTTg < 1:374337/148‑1 (MQ=255) ctctGGGCAGCAGCAGGATTCAGACGATGAACCACCTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGACGC‑CGCCATA‑CGGCGAGCGGCTTggt > 7:152478/1‑148 (MQ=255) ctctGGGCAGCAGCAGGATTCAGACGATGAACCACCTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGACGC‑CGCCATA‑CGGCGAGCGGCTTggt < 8:152478/149‑2 (MQ=255) gggCAGCAGCAGGATTCAGACGATGAACAACCTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTAGTCGGG‑GCGTCTTGGCCCt > 1:328772/1‑149 (MQ=255) ggCAGCAGCAGGATTCAGACGATGAACCACCTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑AGGCG‑GCGGCTTGGCCCGTa > 2:125736/1‑149 (MQ=255) cagGATTCAGACGTTGAACCACCTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTc > 5:314605/1‑149 (MQ=255) ttCAGACGATGAACCACCTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATcc < 8:292751/149‑1 (MQ=255) ttCAGACGATGAACCACCTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATc > 4:221584/1‑148 (MQ=255) ttCAGACGATGAACCACCTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCATGGGCGCGCCATTAGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGCCG‑GCGTCTTTGCCCTTACGGTCTTCCATc > 5:347090/1‑148 (MQ=255) aGACGATGAACCACCTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTcg > 5:366730/1‑149 (MQ=255) aGACGATGAACCACCTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTc < 2:387276/148‑1 (MQ=255) aGACGATGAACCACCTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACCGGCTTCCATCCTcg > 1:284305/1‑149 (MQ=255) tGAACCACCTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGtctc > 3:5217/1‑149 (MQ=255) accaccTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAGAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGc > 2:237493/1‑149 (MQ=255) accTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCtt > 6:127617/1‑149 (MQ=255) cctcctCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAGAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTc < 1:237493/149‑1 (MQ=255) ctccAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTgg < 3:221584/149‑1 (MQ=255) cAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCt < 6:366730/148‑1 (MQ=255) cAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTg > 1:67403/1‑149 (MQ=255) aaaCGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTgc < 6:314605/149‑1 (MQ=255) ggAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGCCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTc > 1:347368/1‑121 (MQ=255) ggAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGCCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTc < 2:347368/121‑1 (MQ=255) ctctTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCTCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCt < 5:197434/149‑1 (MQ=255) ttctAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCtt < 8:28523/147‑1 (MQ=255) ttctAGGTAGGCCAGTGCTGCAAAAGCGTCCT‑GGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTg < 2:319993/147‑1 (MQ=255) gCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAAc < 4:25174/149‑1 (MQ=255) ctgcAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAAt < 3:59468/149‑1 (MQ=255) tgcAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAAt > 6:154725/1‑148 (MQ=255) gcAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCaaa < 8:81759/146‑1 (MQ=255) gcAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCaaa > 7:81759/1‑146 (MQ=255) gcAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAAt > 5:125579/1‑147 (MQ=255) cAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGCGTGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCaaa > 1:46886/1‑146 (MQ=255) cAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCaaa < 2:46886/145‑1 (MQ=255) cAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGa < 5:127617/148‑1 (MQ=255) aaGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGt < 4:5217/149‑1 (MQ=255) cTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGtctttctt < 1:182215/149‑1 (MQ=255) cTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGtctttctt > 4:276682/1‑149 (MQ=255) cTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGtctttatt > 6:337922/1‑149 (MQ=255) ggCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTgg > 1:327172/1‑148 (MQ=255) ggCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGc < 5:154725/149‑1 (MQ=255) ggCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCAGCTCGCAGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTg < 2:328772/147‑1 (MQ=255) gcgcgcCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCa < 3:371943/149‑1 (MQ=255) ccTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCa > 4:134833/1‑149 (MQ=255) cTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCAt > 1:12169/1‑149 (MQ=255) cTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCAt < 6:125579/149‑1 (MQ=255) gggCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCa < 3:276682/149‑1 (MQ=255) ccGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCAGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCAccc > 6:147967/1‑149 (MQ=255) gC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGt < 4:341858/110‑1 (MQ=255) gC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGt > 3:341858/1‑110 (MQ=255) c‑TGTCGTGAACCAATCAGCTCGACGTA‑TTGCG‑GCGTCTTGGCCCTTACGGTCTTCAATCCTCGCTTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTTCTCTGCCCAAATTCAAATGATCTTCTTTCTTGGCATCTTCATGCCACCCtttt < 6:347090/149‑1 (MQ=255) c‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGtt < 3:134833/149‑1 (MQ=255) tCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAAc > 8:354831/1‑149 (MQ=255) gTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAACt > 3:196898/1‑148 (MQ=255) gTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAACt > 8:363291/1‑148 (MQ=255) gTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAACt < 2:327172/148‑1 (MQ=255) tGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCATTGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCCCCCTCCGCTTGAGGTGACCACAGTCAAAAGAGCGACTATGTTGGCATCTGCATGCCACCCTGTTTAcagc > 2:358428/1‑146 (MQ=255) gAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAACTCAc > 3:172912/1‑149 (MQ=255) cAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAACTCActtct > 1:132919/1‑149 (MQ=255) aaGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGc < 2:99991/124‑1 (MQ=255) aaGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGc > 1:99991/1‑124 (MQ=255) aGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAACTCACTTCttt > 8:102222/1‑149 (MQ=255) cGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAACTCACTTCTTTgcc < 8:261675/149‑1 (MQ=255) gCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAACTCACTTCTTTGCCGCCt < 5:337922/148‑1 (MQ=255) a‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGTATCTGCATGCCACCCTGTTAACTCACTTCTTTGCCGCCTAGCCtt > 4:279660/1‑149 (MQ=255) tGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAACTCACTTCTTTGCCGCCTAGCCtt < 4:172912/148‑1 (MQ=255) tGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCATCCTGGCTGCCCGCAGCGCTTGCTCTGCCCAACGTCAAATGAGCCTCTTTATTGGCATCTGCATGCCACCCGGTTAAATGACTTCATTGCCGCCTATCCttg > 4:14265/1‑148 (MQ=255) gcg‑gcgTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGtt > 2:119773/1‑120 (MQ=255) gcg‑gcgTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGtt < 1:119773/120‑1 (MQ=255) gcg‑gcgTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAACTCACTTCTTTGCCGCCTAGCCTtct < 7:354831/148‑1 (MQ=255) cgagcgGCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAACTCACTTCTTTGCCGCCTAGCCTtctc < 2:181653/146‑1 (MQ=255) g‑gcgTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAACTCACTTCTTTGCCGCCTAGCCTtctctc < 2:132919/149‑1 (MQ=255) g‑gcgTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAACTCACTTCTTTGCCGCCTAGCCTtctctc < 2:67403/149‑1 (MQ=255) cgTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGTATCTGCATGCCACCCTGTTAACTCACTTCTTTGCCGCCTAGCCTTCTCTCtt < 3:279660/149‑1 (MQ=255) tCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAACTCACTTCTTTGCCGCCTAGCCTTCTCTCTTgc < 7:363291/149‑1 (MQ=255) | GCTCTGGGCAGCAGCAGGATTCAGACGATGAACCACCTCCTCCAAACGGGGAACTCTTCTAGGTAGGCCAGTGCTGCAAAAGCGTCCTGGGCGCGCCCTTCGGGCCGGC‑TGTCGTGAACCAAGCCGCTCGCCGTA‑TGGCG‑GCGTCTTGGCCCTTACGGGCTTCCATCCTCGCGTCTCCGCCTTCCTGGCTGCGCGCTCCGCTTGCTCTGCCCAACGTCAAATGAGCGTCTTTCTTGGCATCTGCATGCCACCCTGTTAACTCACTTCTTTGCCGCCTAGCCTTCTCTCTTGC > NC_002947/5009579‑5009870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |