Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,074,529 | C→A | 8.3% | R12L (CGC→CTC) | PP_5692 ← | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,074,529 | 0 | C | A | 8.3% | 153.5 / 2.3 | 53 | R12L (CGC→CTC) | PP_5692 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (28/20); new base A (3/2); total (31/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.13e-01 |
GGTTAGGTTCGCCCGCTCGCCCTCGGTAACAATCGCATCAAGGATTACCCAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCTTGAACAGTCTGAACGTTTTCGCCTAGATGGACGGA > NC_002947/5074381‑5074677 | ggTTAGGTTCGCCCGCTCGCCCTCGGTAACAATCGCATCAAGGATTACCCAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTcgc < 7:265986/149‑1 (MQ=255) ccGCTCGCCCTCGGTAACAATCGCATCAAGGATTACCCAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTGGCTCaa > 5:272576/1‑147 (MQ=255) ccGCTCGCCCTCGGTAACAATCGCATCAAGGATTACCCAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGACCGCGAGATCGCTctgat < 5:337437/149‑5 (MQ=255) cGCTCGCCCTCGGTAACAATCGCATCAAGGATTACCCAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGACCGCGAGATCGCTctgatg < 3:359370/149‑6 (MQ=255) gCCCTCGGTAACAATCGCATCAAGGATTACCCAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCAt > 1:289889/1‑149 (MQ=255) ccTCGGTAACAATCGCATCAAGGATTACCCAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGc > 1:3120/1‑149 (MQ=255) ggTAACAATCGCATCAAGGATTACCCAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTc < 7:295775/147‑1 (MQ=255) aaTCGCATCAAGGATTACCCAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGAt > 4:288648/1‑149 (MQ=255) cAAGGATTACCCAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTACTTCAGTCACAATCAGAGCGATCTCTCGGTCGCTCAACAGTCCATGCTCAATGGGATAAACGccc > 7:147224/1‑149 (MQ=255) aaGGATTACCCAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCGATGCTCAATGGGATTCACGCCCt > 2:23760/1‑149 (MQ=255) gATTACCCAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCtttt < 8:129131/149‑1 (MQ=255) gATTACCCAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCtttt > 3:190441/1‑149 (MQ=255) cccAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCcg > 2:124903/1‑149 (MQ=255) ccAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATggg < 6:358264/129‑1 (MQ=255) ccAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCCCGCCCTGTTCCCcgc > 4:348600/1‑149 (MQ=255) ccAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCCGTCGCTCAACAGGCCATGCTCAATggg > 5:358264/1‑129 (MQ=255) tCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTc < 4:190441/149‑1 (MQ=255) tGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAg > 1:220066/1‑148 (MQ=255) ggCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTTAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAatat < 8:40578/149‑1 (MQ=255) gcACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATAttt > 3:359991/1‑148 (MQ=255) cacaGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTga < 1:23760/149‑1 (MQ=255) cATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTcc < 6:304391/149‑1 (MQ=255) aTCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTcc > 2:303013/1‑148 (MQ=255) tCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGa < 3:288648/149‑1 (MQ=255) cATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACa > 5:250509/1‑149 (MQ=255) tttATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACAt > 4:100501/1‑148 (MQ=255) tttATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATc < 2:3120/149‑1 (MQ=255) taGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCAcag > 2:242342/1‑147 (MQ=255) gATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGcc < 1:303013/149‑1 (MQ=255) gATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTAACGCCCTTTACCCCGCCCTCAGCAATATTTGAGAATTTCCGACATCAACGca > 4:5882/1‑148 (MQ=255) gAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGc > 7:220859/1‑149 (MQ=255) ccgccgCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTGGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCt < 6:272576/149‑1 (MQ=255) ccgcAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCtttt < 6:250509/149‑1 (MQ=255) gcAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTg > 6:6650/1‑148 (MQ=255) cAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑Ta < 2:220066/149‑1 (MQ=255) gCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCt > 4:152217/1‑148 (MQ=255) tATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGa < 6:64475/113‑1 (MQ=255) tATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGa > 5:64475/1‑113 (MQ=255) aaGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGACCTTTTCCCCGCTCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCtt < 1:242342/149‑1 (MQ=255) gTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCtt > 8:142652/1‑144 (MQ=255) gTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCtt < 7:142652/144‑1 (MQ=255) gTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCTTGaa > 2:85237/1‑147 (MQ=255) gTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCTTGAACa < 3:100501/149‑1 (MQ=255) tAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCTTGAACAg < 4:153365/149‑1 (MQ=255) tAGTTCAGACCCCATCAGAGCGATCTCGAGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGAGCTCAGCAATATTTGAGAATTTCCGACATCACAGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCTTGAACAg > 7:262711/1‑149 (MQ=255) ttCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGACAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCTTGAACAGTCt > 8:170666/1‑149 (MQ=255) cccATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCAc > 5:84706/1‑53 (MQ=255) cccATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCAc < 6:84706/53‑1 (MQ=255) ccATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCTTGAACAGTCTGAACGttt > 2:315176/1‑149 (MQ=255) tgttgagCGACCGCGAGATCGCTCAACAGGCCATGCTCAATGGGATTCACGCGCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCTTGAACAGTCTGAACGTTTTc > 3:242219/5‑149 (MQ=255) tCAGATCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCTTGAACAGTCTGAACGTTTTCg < 5:6650/149‑1 (MQ=255) gttgagCGACCGCGAGATCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCTTGAACAGTCTGAACGTTTTCg > 4:227298/4‑149 (MQ=255) gagCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCTTGAACAGTCTGAACGTTTTCGcc > 6:144351/1‑148 (MQ=255) gagCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCTTGAACAGTCTGAACGTTTTCGcc > 4:137879/1‑148 (MQ=255) gcgGTCGCTTAAAACGGCATTCTCAATTGGATTCACGGCCTTTTCCCCGCGCTCATCAATATTTTAGAATTTCCGTCATCACCGCCTTAATGCCCCTTTTGCTAGGCTTCAAACCTTGAACAGTCTGAACGTTTTCGCCTAGATGGAc < 1:85237/148‑1 (MQ=255) gcgGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCTTGAACAGTCTGAACGTTTTCGCCTAGATGGAc < 3:152217/147‑1 (MQ=255) cgGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCTTGAACAGTCTGAACGTTTTCGCCTAGATGGACGGa < 2:289889/149‑1 (MQ=255) | GGTTAGGTTCGCCCGCTCGCCCTCGGTAACAATCGCATCAAGGATTACCCAGTCCTGCACGGCGCACAGAGGCATCCATTTATAGATCTTTGAAGCCGCCGCAAACGCATTATCAAGAGGTAGTTCAGACCCCATCAGAGCGATCTCGCGGTCGCTCAACAGGCCATGCTCAATGGGATTCACGCCCTTTTCCCCGCGCTCAGCAATATTTGAGAATTTCCGACATCACCGCCTTAATGCCCCTTTTG‑TAGGCTTCAAACCTTGAACAGTCTGAACGTTTTCGCCTAGATGGACGGA > NC_002947/5074381‑5074677 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |