Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,256,866 T→A 9.9% intergenic (+18/+27) PP_5703 → / ← PP_4634 type III effector protein HopJ/alpha/beta family hydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,256,8660TA 9.9% 146.3 / 5.0 58intergenic (+18/+27)PP_5703/PP_4634type III effector protein HopJ/alpha/beta family hydrolase
Reads supporting (aligned to +/- strand):  ref base T (27/25);  new base A (4/2);  total (31/27)
Fisher's exact test for biased strand distribution p-value = 6.75e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.80e-01

CCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATGGCCAATTTC  >  NC_002947/5256718‑5257012
                                                                                                                                                    |                                                                                                                                                   
ccTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCttt                                                                                                                                                     <  3:338790/149‑1 (MQ=255)
 gttCGGCGAGCACTAGCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGGACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTg                                                                                                                                                    <  4:235611/148‑1 (MQ=255)
      gCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGcc                                                                                                                                               >  7:89459/1‑149 (MQ=255)
      gCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCAAAGCGGcc                                                                                                                                               >  5:66705/1‑149 (MQ=255)
          gCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCAAAGCGGccccgg                                                                                                                                          <  8:256816/149‑3 (MQ=255)
           cACTACCGTGATGTGTTCGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGCCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTCGAGATTGCGGGGGCCGCTTTGCGGCCCCACg                                                                                                                                         <  6:236344/149‑1 (MQ=255)
                ccGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCAAAGCGGccccggcaat                                                                                                                                      <  6:66705/147‑7 (MQ=255)
                          ttGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGc                                                                                                                                                   >  5:188192/1‑125 (MQ=255)
                          ttGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGc                                                                                                                                                   <  6:188192/125‑1 (MQ=255)
                             gCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGCTCCTCCGCCCACCCTc                                                                                                                        >  1:284452/1‑148 (MQ=255)
                             gCCACGCCTGAGGGTAGCGACCATGGCAACATCAGTGCACTGAGCAAACACGGTCTGGCGGGCGTGAAGTATGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTTGGGGCGCACGTTGCTGAGccccggcga                                                                                                                        >  8:283964/1‑142 (MQ=255)
                              ccACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCa                                                                                                                       >  1:341250/1‑148 (MQ=255)
                               cACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACCCTCCAGCGCCCCCCCTCaa                                                                                                                      >  1:359125/1‑148 (MQ=255)
                                  gCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCa                                                                                                                  <  5:85999/149‑1 (MQ=255)
                                   ccTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCat                                                                                                                 <  7:276540/149‑1 (MQ=255)
                                         ggTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGt                                                                                                           <  2:341250/149‑1 (MQ=255)
                                             gCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCa                                                                                                       <  1:159377/149‑1 (MQ=255)
                                              cGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATcc                                                                                                                   <  8:107311/136‑1 (MQ=255)
                                              cGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATcc                                                                                                                   >  7:107311/1‑136 (MQ=255)
                                                  cATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGc                                                                                                                                                   >  4:336683/1‑101 (MQ=255)
                                                  cATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGc                                                                                                                                                   <  3:336683/101‑1 (MQ=255)
                                                     ggCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGa                                                                                                                                        <  4:336930/108‑1 (MQ=255)
                                                     ggCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGa                                                                                                                                        >  3:336930/1‑108 (MQ=255)
                                                       cAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGc                                                                                             >  7:56532/1‑149 (MQ=255)
                                                        aaCATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGc                                                                                                                                                   >  8:6409/1‑95 (MQ=255)
                                                        aaCATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGc                                                                                                                                                   <  7:6409/95‑1 (MQ=255)
                                                             ccGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCTCTTTGCGGCCACACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTc                                                                                         >  1:238625/1‑147 (MQ=255)
                                                              cGTGCACTCATCACACACGGGCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCa                                                                                       <  2:286814/148‑1 (MQ=255)
                                                               gTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGc                                                                                     <  8:56532/149‑1 (MQ=255)
                                                                   aCTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTcc                                                                                 >  6:153046/1‑149 (MQ=255)
                                                                     tGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTcccc                                                                               >  3:296156/1‑149 (MQ=255)
                                                                       aTCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTg                                                                             >  2:288544/1‑149 (MQ=255)
                                                                        tCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGt                                                                                                           >  1:155436/1‑118 (MQ=255)
                                                                          aaaCACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCg                                                                          >  6:109186/1‑149 (MQ=255)
                                                                          aaaCACGGTCTGGCGCGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGTGGCCGCGTTGAGGACCCACGATCCTACGCCCCCCCTCAATCAATGATGGTGCCACGCCCCCCGCCTGACAGACTCCCCGGCCg                                                                          >  4:250967/1‑149 (MQ=255)
                                                                           aaCACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCg                                                                          >  5:112112/1‑148 (MQ=255)
                                                                            acacGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATACAGCGCCCCACCGCAATCCAAGATTGTGCCAGGCCCCCCGCCATCCAGCCAACCCTGCCGc                                                                         >  8:150541/1‑148 (MQ=255)
                                                                              acGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCCCAAGGCTTGAGATTGCCGGGGCCGCATTGCGGCCCCCCGAGCCAGCCCCCACCCACAAACCAAGTACGTGGCAGCCCCCCCCCCATGCACCCGACCCAGCCGcccc                                                                      >  4:79733/1‑146 (MQ=255)
                                                                                    tGGCGGGAGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGTCCCCTTAGCGGCCCAACGATACTGCGCCCAACCTAAATACAAGCTCTTGCCAGGCCCCCCCCCTTCCACCCTCCCATCACGCAACCCCtc                                                                 >  4:313559/1‑147 (MQ=255)
                                                                                        gggcgTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAgg                                                            <  1:133701/149‑1 (MQ=255)
                                                                                        gggcgTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAgg                                                            <  6:48060/149‑1 (MQ=255)
                                                                                                aGTTTGCTGCGCAGCGGCTTGGGTGCAAGGCTTCATCTGGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGc                                                    <  2:284452/149‑1 (MQ=255)
                                                                                                      ctgcGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAg                                               <  1:288544/148‑1 (MQ=255)
                                                                                                      ctgcGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAg                                               <  8:15688/148‑1 (MQ=255)
                                                                                                       tgcGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCCCCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGc                                             >  7:69003/1‑149 (MQ=255)
                                                                                                             gCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTcgc                                       <  7:150541/149‑1 (MQ=255)
                                                                                                               cGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCGTTGGGGCCCCACGATCCTGCGCCCCCCCTCCATCCATGATGGTGCCAGGCCCCCCGCCGTGCCGCCGCCCCGGCCGCCACCCCGGCAAGGCCCCCGGCCACCGGCGTTggcg                                      >  4:146473/1‑148 (MQ=255)
                                                                                                                    gcgcgcAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCCGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCg                                >  3:51697/1‑149 (MQ=255)
                                                                                                                         cAAGGCTTGAGATTGCCGTGGCCGCTTTGCGGCCCCACGATCCTGCTCCCACCCTCAATCCATTATGGTGACAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGTCCACAGGCTTTCGCGAAACCGGTCAt                           <  2:238625/149‑1 (MQ=255)
                                                                                                                             gCTTGAGATTGCCGGGGCCGCTTTGCGGCCGCCACGATCATGCGCCCCCCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTGCCAGCCGCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACCGGCTTTCGGGAAACCGGTCATgg                         >  1:35469/1‑148 (MQ=255)
                                                                                                                             gCTTGAGATTGCCGGGCCCGCGTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGaa                       <  7:283964/149‑1 (MQ=255)
                                                                                                                                 cagaTTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAAc                                                                      <  8:337095/97‑1 (MQ=255)
                                                                                                                                      tcgtggggCCGCAAAGCGGCCCCGCGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCACGGCCACCGGCCACAGGCGTTCGCGAAACCGGTCAt                           >  5:264054/5‑136 (MQ=255)
                                                                                                                                       cgtggggCCGCAAAGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGaaa             >  5:389176/4‑149 (MQ=255)
                                                                                                                                        ccGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGt                                                                                                           >  3:117041/1‑54 (MQ=255)
                                                                                                                                        ccGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGt                                                                                                           <  4:117041/54‑1 (MQ=255)
                                                                                                                                        ccGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGaaa             <  2:359125/148‑1 (MQ=255)
                                                                                                                                             gCCGCTTTGCGTCCCCACGATCCTGCGCCCACCCTCAAAACATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGAGAAATGGCCa       <  3:313559/149‑1 (MQ=255)
                                                                                                                                              ccGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACAGCAAGCCCCCCGGCCACACGCTTTCGCGAAACCCGGCATGGAAAAACGCCAAATGGGCaa      >  8:111137/1‑149 (MQ=255)
                                                                                                                                                  tttGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGa                        >  6:111203/1‑127 (MQ=255)
                                                                                                                                                  tttGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGa                        <  5:111203/127‑1 (MQ=255)
                                                                                                                                                    tGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATGGCCAATTTc  <  5:109186/147‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATGGCCAATTTC  >  NC_002947/5256718‑5257012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: