| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,291,241 | T→A | 5.2% | L280* (TTG→TAG) | PP_4664 → | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,291,241 | 0 | T | A | 5.2% | 274.4 / 2.5 | 88 | L280* (TTG→TAG) | PP_4664 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (43/40); new base A (3/2); total (46/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGCAACTGCGGCGCGGCCGTTGGGCCTATG > NC_002947/5291100‑5291388 | tCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGc > 5:237116/1‑149 (MQ=255) gcgggcggGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCt < 1:81501/148‑1 (MQ=255) gcgggcggGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTa < 2:279683/149‑1 (MQ=255) gtggctggGCCGGAATCTGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTAt < 6:62129/147‑1 (MQ=255) ggcgggGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGc < 1:92157/149‑1 (MQ=255) cgggGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATAGCCCGGCAATGCCg < 4:210851/149‑1 (MQ=255) gggCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCa < 3:185150/149‑1 (MQ=255) ggCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCg > 6:354713/1‑146 (MQ=255) ggAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATAGCCCGGCAATGCCGc > 4:138312/1‑143 (MQ=255) ggAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATAGCCCGGCAATGCCGc < 3:138312/143‑1 (MQ=255) aTCGGGGTGCTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGt < 2:102003/149‑1 (MQ=255) cGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAg > 2:232743/1‑149 (MQ=255) gggTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGc > 8:119895/1‑148 (MQ=255) tggtgCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCAcc < 1:11679/149‑1 (MQ=255) gCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTa > 7:256269/1‑149 (MQ=255) aCTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCCA‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTAcc > 1:310180/1‑149 (MQ=255) aCTGGCAGCAGTACAGAGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGCCCAACAGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATACCCGGGATATGCCGCAGAACTGGTAGCCACCTTTACCg > 8:116865/1‑149 (MQ=255) gcagcaGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCCAGATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGc > 1:305628/1‑149 (MQ=255) gcagcaGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCt > 4:168983/1‑148 (MQ=255) gcagcaGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCt < 3:61453/148‑1 (MQ=255) gcagcaGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCt > 8:217918/1‑148 (MQ=255) agcagTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGt > 8:302863/1‑129 (MQ=255) agcagTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGt < 7:302863/129‑1 (MQ=255) agcagTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGAc > 7:92693/1‑149 (MQ=255) agTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGAcgcg > 5:167574/1‑149 (MQ=255) aCAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACgcgc > 6:107941/1‑147 (MQ=255) cAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCaa < 7:119895/148‑1 (MQ=255) cgcTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGgc < 6:167574/149‑1 (MQ=255) gcTGGCAAGGCATGGTGCC‑GTTGGACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCGGGGCTATTCCGCAGAACTTGTAGCCACCTTTACCGGCTGACGCGCAAGGgcg < 7:116865/149‑1 (MQ=255) tGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGca > 6:181356/1‑149 (MQ=255) gCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGcaca > 5:113592/1‑149 (MQ=255) cATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCAGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGAGCACACCACTg > 8:61059/1‑149 (MQ=255) ctgctgcCAGTGGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACt < 3:352099/147‑1 (MQ=255) aTGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGt > 3:153462/1‑149 (MQ=255) aTGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGt > 3:357053/1‑149 (MQ=255) ctgcC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGa < 6:113592/149‑1 (MQ=255) cc‑GTTGCACTGGGTGGAACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGAAGAACTGGTAGCCACCTTTACAGGCTGACGCGCAATGGAGCACACCACTGTCGAgg > 7:16918/1‑148 (MQ=255) gCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAAc < 1:44443/148‑1 (MQ=255) aCTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGc > 6:278858/1‑149 (MQ=255) ggTGGCACTGCAGGGGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGc > 7:327726/1‑149 (MQ=255) ggTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTg < 6:237116/148‑1 (MQ=255) ggTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGc < 8:327726/149‑1 (MQ=255) gTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGc > 3:356273/1‑148 (MQ=255) ggCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCa > 3:129463/1‑148 (MQ=255) cACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGAc < 2:263505/105‑1 (MQ=255) cACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCa > 8:366004/1‑146 (MQ=255) cACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATa < 7:366004/148‑1 (MQ=255) cACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAg < 3:42801/149‑1 (MQ=255) aCTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAgc > 5:197558/1‑149 (MQ=255) cTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACATCACTGTCGAGGCAAACCGCCTGCCATAgcg < 1:232743/149‑1 (MQ=255) cAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGcgcg < 7:108675/148‑1 (MQ=255) ggAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCggg > 3:164590/1‑148 (MQ=255) gAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCgg > 4:56014/1‑58 (MQ=255) gAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCgg < 3:56014/58‑1 (MQ=255) aTGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCa > 6:76079/1‑144 (MQ=255) aTGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCa < 5:76079/144‑1 (MQ=255) gggCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCt > 3:229408/1‑149 (MQ=255) gCCAACCGCCTGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCAGACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTgg < 3:168983/149‑1 (MQ=255) gCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTgg < 7:217918/149‑1 (MQ=255) gCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTgg < 4:33168/149‑1 (MQ=255) gCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTgg < 4:153462/149‑1 (MQ=255) ccAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGa > 4:338667/1‑149 (MQ=255) ccAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGa > 2:15408/1‑149 (MQ=255) cAACCGCCTGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCTGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGcc < 4:345430/122‑1 (MQ=255) cAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGAATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGcc > 3:345430/1‑122 (MQ=255) cgccgGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCg < 5:354713/149‑1 (MQ=255) ccgGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAg < 2:305628/149‑1 (MQ=255) ccgGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAg > 1:120553/1‑149 (MQ=255) ccgGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGACTGCCATAGCGCGGGCAGACACCTGCACGTCGAg > 4:93283/1‑149 (MQ=255) gTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGGCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGcc > 1:255025/1‑148 (MQ=255) cTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGc < 1:181933/149‑1 (MQ=255) cTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGc < 4:229408/149‑1 (MQ=255) tGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGc < 6:55152/123‑1 (MQ=255) tGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGc > 5:55152/1‑123 (MQ=255) tGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGc > 5:143461/1‑148 (MQ=255) gtgCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGCAACTg > 6:219677/1‑149 (MQ=255) gtgCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGCAACTg < 8:256269/149‑1 (MQ=255) aCGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGCAACTgcggcgc > 5:72582/1‑149 (MQ=255) aCGCGATTATGCGGCATTGCCGGGCTACGCCGCAGAACTGCTAGCCACCTTTACCGGCGGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGCAACTgcggcgc < 6:300469/149‑1 (MQ=255) gATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGCAACTGCGGCGCGGcc > 4:43458/1‑149 (MQ=255) ctGCGGCATAGCCCGGCAATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGCAACTGCGGCGCGGCCGTTg > 4:151323/2‑149 (MQ=255) tGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGCAACTGCGGCGCGGCCGTTg < 2:310180/148‑1 (MQ=255) cGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGCAACTGCGGCGCGGCCGTTGGGc < 8:92693/149‑1 (MQ=255) cGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGCAACTGCGGCGCGGCCGTTGGGc < 5:278858/149‑1 (MQ=255) cGGCACTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGCAACTGCGGCGCGGCCGTTGGGc < 2:127002/149‑1 (MQ=255) ggCATTGCCGGGCTATGCCGCAGAACTGTTAGCCACCTTTACCGGCTGACGCGCAAGGGAGCACACCACTGTCGAGGAAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGCAACTGCGGAGCGGCCGTTGGGcc > 7:349601/1‑149 (MQ=255) cATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGCAACTGCGGCGCGGCCGTTGGTCCTa > 6:387529/1‑149 (MQ=255) cATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGCAACTGCGGCGCGGCCGTTGGGCCTa > 3:338326/1‑149 (MQ=255) ttGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGCAACTGCGGCGCGGCCGTTGGGCCTATg < 6:197558/149‑1 (MQ=255) | TCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCC‑GTTGCACTGGGTGGCACTGCAGGAGCC‑‑ATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCCTGCCATAGCGCGGGCAGACACCTGGACGTCGAGCCCAGGCAACTGCGGCGCGGCCGTTGGGCCTATG > NC_002947/5291100‑5291388 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |