| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,572,202 | A→T | 6.9% | intergenic (‑72/+20) | yicG ← / ← orn | inner membrane protein/oligoribonuclease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,572,202 | 0 | A | T | 6.9% | 171.0 / 3.0 | 58 | intergenic (‑72/+20) | yicG/orn | inner membrane protein/oligoribonuclease |
| Reads supporting (aligned to +/- strand): ref base A (21/33); new base T (2/2); total (23/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.06e-01 | |||||||||||
CCGCGACGCCCGGCAGACAGCGCGCCAGTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGTGGGTATTGCCCTTCTTGAAGCTGTCACGCACGTCCGGCGCCCAGCGCGCGGCCAG > NC_002947/5572057‑5572350 | ccGCGACGCCCGGCAGACAGCGCGCCAGTCATGGCTTAGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAat < 3:106142/148‑1 (MQ=255) gggACGCCCGGCAGACAGCGCGCAAGGCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATc < 8:126759/147‑1 (MQ=255) gcgACGCCCGGCAGACAGCGCGCCAGTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATc < 7:156167/149‑1 (MQ=255) gCCCGGCAGACAGCGCGCCAGTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATATTGTATCTgcgc < 6:71774/149‑1 (MQ=255) gCCCGGCAGACAGCGCGCCAGTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATATTGTATCTgcgc < 5:18772/149‑1 (MQ=255) cccGGCAGACAGCGCGCGAGTCATGGCTTCGGCTGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGcc < 5:25018/149‑1 (MQ=255) cccGGCAGACAGCGCGCCAGTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGcc < 2:286494/149‑1 (MQ=255) cGGCAGACAGCGCGCCAGTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCt < 5:350645/142‑1 (MQ=255) cGGCAGACAGCGCGCCAGTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCt > 6:350645/1‑142 (MQ=255) gCAGACAGCGCGCCAGTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGttt < 2:295567/149‑1 (MQ=255) cAGACAGCGCGCCAGTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTc < 6:34672/149‑1 (MQ=255) cAGACAGCGCGCCAGTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTc < 7:67998/149‑1 (MQ=255) aGCGCGCCAGTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTACGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTc < 2:129475/149‑1 (MQ=255) gcCAGTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGc < 7:209599/149‑1 (MQ=255) gcCAGTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGAGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCATCTACAATATCTGCTCCGTTTCGACTCACAGc > 2:168931/1‑149 (MQ=255) cAGTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCtt > 1:335296/1‑149 (MQ=255) aGTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTtg < 4:112189/149‑1 (MQ=255) gTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTtga < 2:335296/149‑1 (MQ=255) aTGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTtgatga < 4:139830/149‑1 (MQ=255) tGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACAAGTTGCCCAAGGCACCAAAACGGGGCGCATATACAATATCTGCGCCGTTTCGACTCACAGCTtgatg > 6:157019/1‑147 (MQ=255) cggcggTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAATGGCTCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCt < 7:360731/148‑1 (MQ=255) ggTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGa < 2:97225/149‑1 (MQ=255) gTAGAGCATCAACCACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCg < 3:147337/149‑1 (MQ=255) gTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCg > 2:20324/1‑149 (MQ=255) gagCAACAACAAAAAGGTGAGGGTCCGTGCAAGAAAGGCGAGCAGTTAAACCAGTTGCACAAGGCACCAAAAGGGGGCGCAGAAACAATTACTGCGACGTTTCGAGACACAGCTGGATAAAGTTAACGAGAAAGTGAAGGAGTTCTGc > 4:260722/1‑148 (MQ=255) cATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGcgatc < 2:26692/149‑1 (MQ=255) aTCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGcg > 6:276364/1‑145 (MQ=255) aTCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGcg < 5:276364/145‑1 (MQ=255) caTGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCgg > 6:384765/1‑149 (MQ=255) gTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGatat > 6:209712/1‑149 (MQ=255) tGCTGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGAGCAGATACAATATCTGAGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGAGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATc < 5:157019/149‑1 (MQ=255) gTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTc > 3:135131/1‑147 (MQ=255) tCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCTGTTggg > 2:157179/1‑124 (MQ=255) tCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCgg < 1:157179/124‑1 (MQ=255) cGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCgg > 7:43935/1‑122 (MQ=255) cGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCgg < 8:43935/122‑1 (MQ=255) cGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAgc < 1:20324/148‑1 (MQ=255) aaaGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGTgg < 5:69539/149‑1 (MQ=255) aaaGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGTgg < 5:209712/149‑1 (MQ=255) aaGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGTggg > 3:203298/1‑149 (MQ=255) cgcAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGTGGGTATTGc > 4:152022/1‑149 (MQ=255) cgcAGTCGAACCAGGTGCCCCAGGCACCAAAACGTGGCGCTGATAGAATAGCTGCGCCGTTTGGACTCACAGCTTTATGACGTGAGCGCGATCGTGACGCAGTTCGGCGAGCGATTCGCGGTTTTAGTCCAGCGCCAGGTGGGTATTGc < 6:380484/149‑1 (MQ=255) cTAACCACTTGCCGAACGCACCAACACCGGGCGCTGCTACAATAGCTGCGCGGTGTCGACTCACTGCTTGATGAACTGCTCGCGATAGAGACGCAGTTCGGCGATCGATTCGCGGATATCGGCCAGCGCCAGGTGGGTTTAGCCcttc < 8:356258/148‑1 (MQ=255) tAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGTGGGTATTGCCcttctt > 1:371651/1‑149 (MQ=255) tAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGTGGGTATTGCCcttctt > 7:272676/1‑149 (MQ=255) tAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGTGGGTATTGCCcttctt > 6:36807/1‑149 (MQ=255) aaCCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATAGCGTCAAGCGCCAGGTGGGTAGTGCCctgctt > 4:268035/1‑148 (MQ=255) aCCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGTGGGTATTGCCcttctt < 5:384765/147‑1 (MQ=255) cccAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGt > 6:342552/1‑123 (MQ=255) cccAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGt < 5:342552/123‑1 (MQ=255) cccAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGTGGGTATTGCCCTTCTTGAAGCTGTc < 5:137797/148‑1 (MQ=255) cAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATc > 4:100497/1‑107 (MQ=255) cAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATc < 3:100497/107‑1 (MQ=255) ggCACCAAAAGGGGGCGCAGCTACAATATCTGCGCCGGTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGTGGGTATTGCCCTTGTTGAAGCTGTcacgcac > 2:132308/1‑149 (MQ=255) ggCGCAGATATTGTATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGTGGGTATTGCCCTTCTTGAAGCTGTCCCGCACGTCCGGCGCCCAg > 4:326382/1‑149 (MQ=255) gcgcAGATATTGTATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATGCGCGGATATCGTCCAGCGCCAGGGGGGTATTGCCCTTCTTGAAGCTGTCAAGCACGTCCGGCGCCCAgc > 6:173456/1‑149 (MQ=255) gATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGTGGGTATTGCCCTTCTTGAAGCTGTCACGCACGTCCGGCGCCCAGcgcgcg < 4:203298/149‑1 (MQ=255) tACAATATCTGCGCCGGTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGTGGGTATTGCCCTTCTTGAAGCTGTCACGCACGTCCGGCGCCCAGCGCGCGGc < 3:364071/149‑1 (MQ=255) aaTATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGTGGGTATTGCCCTTCTTGAAGCTGTCACGCACGTCCGGCGCCCAGCGCGCGGCCAg > 2:69827/1‑149 (MQ=255) | CCGCGACGCCCGGCAGACAGCGCGCCAGTCATGGCTTCGGCGGTAATGGCGATAAGGTAGAGCATCAACAACATGGTGCGGGTCCGTGCAGGAAAGGCGCGCAGTCTAACCAGTTGCCCAAGGCACCAAAAGGGGGCGCAGATACAATATCTGCGCCGTTTCGACTCACAGCTTGATGAAGTGCTCGCGATAGTGACGCAGTTCGGCGATCGATTCGCGGATATCGTCCAGCGCCAGGTGGGTATTGCCCTTCTTGAAGCTGTCACGCACGTCCGGCGCCCAGCGCGCGGCCAG > NC_002947/5572057‑5572350 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |