| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,746,485 | G→C | 5.3% | intergenic (+32/+67) | PP_5042 → / ← PP_5043 | hypothetical protein/PhoPQ‑activated pathogenicity‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,746,485 | 0 | G | C | 5.3% | 237.7 / 3.4 | 76 | intergenic (+32/+67) | PP_5042/PP_5043 | hypothetical protein/PhoPQ‑activated pathogenicity‑like protein |
| Reads supporting (aligned to +/- strand): ref base G (34/38); new base C (2/2); total (36/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-02 | |||||||||||
GTAAAAGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCT > NC_002947/5746338‑5746629 | gTAAAAGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCcgcgc > 8:30192/1‑149 (MQ=255) tAAAAGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCcgcgc‑g > 3:179265/1‑149 (MQ=255) tAAAAGCCGGCTGTGCACCATTTATGACAAGCGCCAGGATACCTGCCGCACCCACCCCAAGGTCGGGCCACGTCCGGGGTAATGCGGCTACAAGCCCAAGGTGGTAGCTCGAGGAGTCTTGCGCCGGCGAATAAATCGAGCGCcccgc‑g > 2:368100/1‑149 (MQ=255) aaaGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCgc‑gg < 5:241878/148‑1 (MQ=255) tccGGCTGGGCACCATTTATGACAAGCCCCCGGATACCGGCCGGAACCACCCCAAGGGCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGGCTTGCGCCGGGGCATAAATCGAGCGCCGCgc‑gggcgg < 8:185820/148‑1 (MQ=255) ggCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGgcggcg < 6:26526/149‑1 (MQ=255) ggCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGgcgc > 5:168872/1‑149 (MQ=255) tgtgCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTc > 8:74721/1‑148 (MQ=255) cACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTc > 5:285106/1‑149 (MQ=255) cATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCtgt > 5:224555/1‑149 (MQ=255) gACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATg > 4:253497/1‑149 (MQ=255) gACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATg > 2:59090/1‑149 (MQ=255) aCAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGc > 1:261698/1‑149 (MQ=255) cacgcgcCCGTATACCTCCCGAACCCACCCAACGGGCGGCCAAGGGCGGGGGTTTTGCGCCTACACCCCCACGGGGGTTGGGCTTTGAGTCTTGCGCCGGGGCATAAATCGCGCGCCGCGC‑GGGCGGGGCTCGATTCTGT‑GGCGATGcc < 6:224555/146‑1 (MQ=255) aGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGcc > 4:128838/1‑147 (MQ=255) aGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGa < 5:68573/149‑1 (MQ=255) cccGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTg > 6:350098/1‑149 (MQ=255) cccGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTg > 7:890/1‑149 (MQ=255) ggATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGc < 1:59090/149‑1 (MQ=255) aaaCCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTGGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCAt < 2:80031/147‑1 (MQ=255) cTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTc > 7:362834/1‑117 (MQ=255) cTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTc < 8:362834/117‑1 (MQ=255) cTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAg > 4:40167/1‑149 (MQ=255) cTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCCAGCTGGGCATGAAg > 7:319871/1‑149 (MQ=255) tGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAg > 4:228046/1‑148 (MQ=255) ccgacaccaccCAACGGTCGGGCCAGGGCGGGGGTTTTGCGCCTACAAGCCCAAGGTGGTGGGGTGTTGTGTCTTGCGCCGGGGAAAAAATCGTGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCAc < 8:890/144‑1 (MQ=255) ccGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAACTCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCa < 1:306982/148‑1 (MQ=255) accaccCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGTCGGCGATGCCGAGCTGGGCATGAAGCACTGaa < 1:238080/149‑1 (MQ=255) ccaccCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAAcc > 1:30874/1‑149 (MQ=255) cccAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCAcc > 5:165220/1‑149 (MQ=255) ccAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGaa > 8:218227/1‑134 (MQ=255) ccAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGaa < 7:218227/134‑1 (MQ=255) cAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGc > 4:125548/1‑149 (MQ=255) gTCGGGCCACGGCCGGTGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTccc < 7:74721/149‑1 (MQ=255) gTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCGGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTccc < 3:128838/149‑1 (MQ=255) gTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCCCTGAACCCACCGCTcc > 3:219252/1‑148 (MQ=255) gTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTcc > 8:158964/1‑148 (MQ=255) cGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCCC‑GCGCGGCGCTCg > 6:5358/1‑97 (MQ=255) cGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCCC‑GCGCGGCGCTCg < 5:5358/97‑1 (MQ=255) gggCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCAtt > 3:93574/1‑149 (MQ=255) gCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTc > 4:271574/1‑149 (MQ=255) gCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTc < 5:350098/149‑1 (MQ=255) ccACGGCCGGGGTATTGCGCCTACATGCCCAAGGTGGTTGGGCGTTGTGTCTTGCGCCGGGGCATAAATCGAGGGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTca < 4:147592/149‑1 (MQ=255) ccACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATGGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTca < 6:285106/149‑1 (MQ=255) ccACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCAttt > 5:89818/1‑147 (MQ=255) ccACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTca < 7:25336/149‑1 (MQ=255) ccACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTca < 3:253497/149‑1 (MQ=255) ccACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTca < 2:30874/149‑1 (MQ=255) cACGGCCGGGCTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTAGAGTCTTGCGCCGGGGCATAAATCGAGCTCCGCGA‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGAACTGAACCCACCGCTCCCATGTcag > 6:69777/1‑149 (MQ=255) ggTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCgggg < 3:125548/149‑1 (MQ=255) gcgcCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCa > 1:176789/1‑119 (MQ=255) gcgcCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTc > 6:275465/1‑149 (MQ=255) cgcATACACGCCCACGGGGGTTGGGGGTTCTGTCTTCCCCCGGGGCATAATTCGCCCGCGGCGG‑GGGGGCCGGTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTc < 2:152318/148‑1 (MQ=255) cTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTAAGCCAGCGGGGAAGCTCCgg > 1:196807/1‑148 (MQ=255) catgCCCATGGGGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGG‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCaa < 6:214258/145‑1 (MQ=255) ccAAGGTGGTTGGGCGTTTAGTCTTGCGCCGGGGCATAAATCGAGCGCCGGGC‑GGGCGGCGCTGGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAccc < 2:261698/149‑1 (MQ=255) ccAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAcac > 8:244979/1‑147 (MQ=255) cAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAcccc > 3:158379/1‑149 (MQ=255) gggggtGGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGG‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCt < 4:179265/146‑1 (MQ=255) gtTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATc < 3:271574/149‑1 (MQ=255) ggCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCCCCGCGG‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCt < 3:175371/149‑1 (MQ=255) ttGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggtg < 7:30192/149‑1 (MQ=255) tGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggtg > 8:280356/1‑148 (MQ=255) aGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGAt > 7:137843/1‑149 (MQ=255) tCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGc > 3:331826/1‑149 (MQ=255) tCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGc < 6:165220/149‑1 (MQ=255) ttGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGACGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCt > 7:84018/1‑148 (MQ=255) gcgcCGTGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCa < 4:86541/148‑1 (MQ=255) gcgcCGGGCAATAAATCCAGCCCCGGGC‑GGGCGGCGCTCGATTCTGT‑GGCTATGCCGATCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCa < 1:368100/148‑1 (MQ=255) ggggCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGGTGCTCAGGATaa < 6:168872/149‑1 (MQ=255) aTAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGCACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTg > 5:189295/1‑149 (MQ=255) tAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGc < 7:158964/149‑1 (MQ=255) aaTCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCgg < 4:93574/149‑1 (MQ=255) aaTCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCgg < 4:158379/149‑1 (MQ=255) aTCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACACACCTCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGc < 7:244741/149‑1 (MQ=255) tCGAGCGCCGCCC‑GCGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCTGCAAGCAccccc < 2:284267/111‑1 (MQ=255) tCGAGCGCCGCCC‑GCGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAccccc > 1:284267/1‑111 (MQ=255) aGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCaaaa < 3:40167/149‑1 (MQ=255) gccgcGC‑GGGCGGGGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGc < 1:356930/149‑1 (MQ=255) gccgcGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGc < 6:89818/149‑1 (MQ=255) ccgcGC‑TGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGTACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCTCCCCCCTGATCCGCTGGTGGATGCTGAGGATAAGTCTGCGGCAAAACGCt < 5:69777/149‑1 (MQ=255) | GTAAAAGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGC‑GGGCGGCGCTCGATTCTGT‑GGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCT > NC_002947/5746338‑5746629 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |