| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,777,402 | C→G | 5.6% | intergenic (+21/+22) | betA‑II → / ← PP_5065 | choline dehydrogenase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,777,402 | 0 | C | G | 5.6% | 233.5 / 2.8 | 71 | intergenic (+21/+22) | betA‑II/PP_5065 | choline dehydrogenase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (34/33); new base G (2/2); total (36/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.10e-01 | |||||||||||
CCGAGAAGATTTCGGACAAGATCCGTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGC > NC_002947/5777260‑5777547 | ccGAGAAGATTTCGGACAAGATCCGTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGc > 2:80298/1‑149 (MQ=255) cGAGAAGATTTCGGACAAGATCCGTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAACCAGGGCTGAGGCCTTGCTCAGGGGCCGCGCCGCGGcc > 8:124425/1‑149 (MQ=255) gagaAGTTTTCGGACAAGATGCGTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGccc < 1:7852/149‑1 (MQ=255) gagaAGATTTCGGACAAGATCCGTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCTGCGCGGccc < 4:175928/149‑1 (MQ=255) gagaAGATTTCGGACAAGATCCGTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGccc > 7:153278/1‑149 (MQ=255) agaTTTCGGACAAGATCCGTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCTGCGCGGCCCCtga < 1:119788/149‑3 (MQ=255) ttCGGACAAGATCCGTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACg > 1:199943/1‑149 (MQ=255) ggACAAGCTCCGTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGtt < 7:249083/148‑1 (MQ=255) gACAAGATCCTTGTTGTCAAGCCTCTGCCGCGCATCACCGCCAAGTACTACGTTGCGGGGGATTCATCAGTGAAAGGCAAGCCGATGCGTTAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGttt < 2:343935/148‑1 (MQ=255) aCAAGATCCGTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGc < 2:126021/149‑1 (MQ=255) cAAGATCCGTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCt < 3:203597/149‑1 (MQ=255) aaGATCCGTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCt > 8:101139/1‑148 (MQ=255) aaGATCCGTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCt > 2:107776/1‑148 (MQ=255) aGATCCGTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCa < 1:222493/149‑1 (MQ=255) cGTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCg‑g < 1:107776/149‑1 (MQ=255) gTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCg‑g‑g > 4:119813/1‑149 (MQ=255) ggTCGCAAGCCACTGCCGCGCCGCCCCGCCAAGTACTACGGGGCGGGGGATGCACCCGGGAAAGGCAAGCCGATGCGTGAAGTGCAACAGGGCTGAGGCCTTGATCCGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCa < 7:124425/149‑1 (MQ=255) gCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCaaa > 5:352006/1‑148 (MQ=255) aCTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAAt < 3:77947/149‑1 (MQ=255) cTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAAtg < 3:148364/149‑1 (MQ=255) ccGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGTCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTgc < 5:270803/149‑1 (MQ=255) gcgcAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTgcgc < 2:310083/149‑1 (MQ=255) gcagcaCCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCAt < 3:355817/149‑1 (MQ=255) agcaCCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATc > 1:89623/1‑148 (MQ=255) caCCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAAc > 3:92627/1‑149 (MQ=255) ccGCCACCTAGTACTTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGAGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACg > 7:251782/1‑148 (MQ=255) cGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGATTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGa > 7:156268/1‑148 (MQ=255) gCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAat < 2:181332/149‑1 (MQ=255) gCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAat < 3:119813/149‑1 (MQ=255) cAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAatca < 7:316565/149‑1 (MQ=255) aGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAatcat‑‑c < 2:199943/149‑1 (MQ=255) aGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAatcat‑‑c > 2:112029/1‑149 (MQ=255) tactacGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCt > 1:66482/1‑149 (MQ=255) ctacGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTc < 5:60743/148‑1 (MQ=255) cGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGa‑ca > 6:271268/1‑149 (MQ=255) cGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGa‑c < 8:261453/148‑1 (MQ=255) gCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTACGGGGGGGTTCAGGGGAGAGCAGCGCAAAAAATGTGAGCATAAACGAATAAT‑‑CCTCGA‑CACCCAGTCGccc > 1:126650/1‑149 (MQ=255) cACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGc > 6:183652/1‑149 (MQ=255) cAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCTACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAg > 8:132295/1‑149 (MQ=255) tGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAgcgc > 2:77177/1‑149 (MQ=255) tGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAAAAAGCGCATAAACGAATAAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAgcgc > 1:130467/1‑149 (MQ=255) aaaGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCt > 1:180231/1‑149 (MQ=255) aaaGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCt > 2:164098/1‑149 (MQ=255) cAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGa < 2:89623/149‑1 (MQ=255) aaGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGGCGCTGGCggg < 5:183652/149‑3 (MQ=255) aaGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGAt < 2:66482/149‑1 (MQ=255) aGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATc < 8:89488/149‑1 (MQ=255) cGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGaacaac < 1:77177/148‑1 (MQ=255) cGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACt < 8:153278/149‑1 (MQ=255) tgaagtgaaACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGt < 6:352006/149‑1 (MQ=255) aagtgaaACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTc < 5:155414/148‑1 (MQ=255) gtgaaACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGACCACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCt < 1:80298/149‑1 (MQ=255) gaaACAGGGCTGAGGCCTTGATCAGGGGCCGCACAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCtgtg > 5:24454/1‑149 (MQ=255) aaaCAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTgc > 7:39848/1‑149 (MQ=255) aaCAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTgcg < 6:167301/149‑1 (MQ=255) aCAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTgcg > 3:2627/1‑148 (MQ=255) ggCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCAttt < 4:92627/149‑1 (MQ=255) aGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCATCCCCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTca < 1:112029/148‑1 (MQ=255) cTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACgg > 5:21236/1‑149 (MQ=255) cTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACgg > 1:118857/1‑149 (MQ=255) ttGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGc > 6:354970/1‑149 (MQ=255) gATCAGGGGCCGCGCAGCGTCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CTCCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGcc < 8:156268/148‑1 (MQ=255) aaGGGGCCGCTGCGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCCACGACTCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTcc > 7:362457/2‑149 (MQ=255) ggggCCGCTGCGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCg > 1:346604/1‑149 (MQ=255) gggCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGc > 3:130733/1‑149 (MQ=255) gggCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGc > 2:33248/1‑149 (MQ=255) gggCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGc > 7:37975/1‑149 (MQ=255) gggCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTAGCCCCGCCAGCGCCGGGCGATCGAACAACAGACCTGTGCGCATTTCCCGCACGGCCTTCCCGc > 8:244429/1‑149 (MQ=255) cgcgCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTgg > 7:348809/1‑149 (MQ=255) cgcgCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCACAAAAAATGTGCGCATCAATGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCAttt > 6:379284/1‑127 (MQ=255) cgcgCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCACAAAAAATGTGCGCATCAATGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCAttt < 5:379284/127‑1 (MQ=255) gcgcAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGC‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGgc > 5:324031/1‑149 (MQ=255) | CCGAGAAGATTTCGGACAAGATCCGTGGTCGCAAGCCACTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGGGATGCACCAGTGAAAGGCAAGCCGATGCGTGAAGTGAAACAGGGCTGAGGCCTTGATCAGGGGCCGCGCAGCGGCCCCTTTCACGTTTGCTCAGGCG‑G‑GCAGCGCAAAAAATGTGCGCATCAACGAATCAT‑‑CCTCGA‑CACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGC > NC_002947/5777260‑5777547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |