| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,098,710 | G→T | 6.7% | Q127K (CAG→AAG) ‡ | PP_5350 ← | RpiR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,098,710 | 0 | G | T | 6.7% | 281.2 / 8.2 | 90 | Q127K (CAG→AAG) ‡ | PP_5350 | RpiR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (40/44); new base T (2/4); total (42/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.66e-01 | |||||||||||
CCGGTTTCAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGG > NC_002947/6098563‑6098856 | ccGGTTTCAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTgg < 6:144956/149‑1 (MQ=255) ggTTTCAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGc < 3:97802/149‑1 (MQ=255) gTTTCAGGGTAACGGCCGACATCGCTTGCATGAGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGc > 1:244245/1‑148 (MQ=255) cAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATg < 8:202010/148‑1 (MQ=255) cAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCGGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCATGGcccag < 5:103427/148‑4 (MQ=255) gggTAACGGGCGACATCGCTTGCATGTGGGGGTGGGAATACGCGTCCTCTCTTAGCAGCTGGGGGAATAAATTTTTCCTCTGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATgg < 1:314972/149‑1 (MQ=255) gggTAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGgcg > 3:50625/1‑149 (MQ=255) gggTAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGgcg < 1:386353/149‑1 (MQ=255) ggTAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGgcg > 7:146433/1‑148 (MQ=255) tAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCATGGCCCAGgcgcag < 1:241729/149‑3 (MQ=255) cGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCATGGCCCAGgcgcagcgg < 1:78677/149‑6 (MQ=255) cGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCATGGCCCAGgcgcagcgg > 2:78677/1‑144 (MQ=255) gCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGc < 4:256726/149‑1 (MQ=255) gCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCa < 4:50625/148‑1 (MQ=255) gCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCa < 6:45427/148‑1 (MQ=255) cTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCTCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAgc < 2:305518/149‑1 (MQ=255) ttGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAgcg > 4:181437/1‑149 (MQ=255) aTGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTg > 2:345685/1‑149 (MQ=255) tgtgGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGc < 1:281845/149‑1 (MQ=255) ggggTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGa > 8:295928/1‑148 (MQ=255) gggTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGAt > 1:133532/1‑148 (MQ=255) gggTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGAt > 6:308767/1‑148 (MQ=255) ggTCGGAATACGCTGCCGCTCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGAACCGGACGCGCCAAAGCCAGAGAAATCTACCCGCTGCGACTGGGCAATGGCGCTCACGGCATGTTGCAGCGCCTGCGGATc > 4:243507/1‑148 (MQ=255) tCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAg < 2:57082/149‑1 (MQ=255) tCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAg < 6:166615/149‑1 (MQ=255) ggAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGt < 8:70174/149‑1 (MQ=255) gAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCtt < 6:251860/124‑1 (MQ=255) gAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCtt > 5:251860/1‑124 (MQ=255) cTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCgcgc < 5:141410/149‑1 (MQ=255) cgcgCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAGGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGGACtt > 8:328269/1‑149 (MQ=255) cgcgCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACtt < 2:133532/149‑1 (MQ=255) gcgcTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCACACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTc > 6:85079/1‑149 (MQ=255) cgcTGAGCAGCATGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTcc < 8:146433/149‑1 (MQ=255) cgcTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCGCGCGCACTTcc < 4:236403/149‑1 (MQ=255) gcTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCa > 7:184538/1‑149 (MQ=255) gcagcaGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAgg < 2:339461/149‑1 (MQ=255) agcagGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGgt < 6:6523/149‑1 (MQ=255) cagGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTAACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCAGCAGCgtgt > 2:235847/1‑149 (MQ=255) cagGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCATGGCCCAGgcgcag < 6:374616/94‑3 (MQ=255) cagGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCATGGCCCAGgcgcag > 5:374616/1‑92 (MQ=255) ggCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGtgtg > 7:66217/1‑148 (MQ=255) gCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCa < 8:56008/149‑1 (MQ=255) ggAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAgg > 6:34907/1‑149 (MQ=255) ggAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAgg > 6:142921/1‑149 (MQ=255) gaa‑gaaCTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAggg > 3:263367/1‑149 (MQ=255) a‑gaaCTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCttgttg > 8:360814/1‑97 (MQ=255) a‑gaaCTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCttgttg < 7:360814/97‑1 (MQ=255) a‑gaaCTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGggtg < 1:345685/149‑1 (MQ=255) a‑gaaCTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGggtg < 3:20942/149‑1 (MQ=255) aaCTTGTGCT‑GGGCATCGGCCGCAACCGGACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGggtggt > 1:218268/1‑149 (MQ=255) aaCTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGggtggt > 6:227233/1‑149 (MQ=255) cTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGgtgt < 7:295928/149‑1 (MQ=255) cTTGTCCT‑GCGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGgtgt < 8:122799/149‑1 (MQ=255) ttGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAgg > 7:77487/1‑132 (MQ=255) ttGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAgg < 8:77487/132‑1 (MQ=255) cT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCg > 8:346056/1‑145 (MQ=255) gggCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGaa > 8:209335/1‑145 (MQ=255) gggCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGaa < 7:209335/145‑1 (MQ=255) gCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCtt > 2:208352/1‑149 (MQ=255) aTCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCa < 5:227233/149‑1 (MQ=255) aTCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCa < 2:218268/149‑1 (MQ=255) gCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCt > 2:184001/1‑149 (MQ=255) ccGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTg < 5:142921/149‑1 (MQ=255) cGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATc > 6:168639/1‑139 (MQ=255) cGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATc < 5:168639/139‑1 (MQ=255) cGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTg > 1:262938/1‑148 (MQ=255) gCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTg > 3:282050/1‑147 (MQ=255) gCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTa < 2:244245/149‑1 (MQ=255) gCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCACCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTg > 1:105482/1‑147 (MQ=255) cGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGAcc < 1:184001/149‑1 (MQ=255) gcgcCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATc < 3:181437/149‑1 (MQ=255) gcgcCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATc < 5:308767/149‑1 (MQ=255) gcgcCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGCGGACCGCATc > 6:93267/1‑149 (MQ=255) aaaGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCtt > 5:118340/1‑149 (MQ=255) aaaGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTAGGCGACCGAATCGTcat > 5:38478/1‑147 (MQ=255) aGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCg < 2:262938/149‑1 (MQ=255) ccATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTg > 5:20641/1‑149 (MQ=255) ccATAGAAATCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTAGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCGTCGTg > 8:171441/1‑149 (MQ=255) cATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTgg < 5:34907/149‑1 (MQ=255) aGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGATGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATg > 4:223128/1‑149 (MQ=255) gAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATg < 8:184538/148‑1 (MQ=255) aaCTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGc > 1:213146/1‑149 (MQ=255) aaCTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGGCGGCGACCGAATCGTCTTCGTGGATGGc < 7:171441/149‑1 (MQ=255) tACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGaa < 1:208352/147‑1 (MQ=255) tACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACt > 2:178157/1‑149 (MQ=255) cccGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCg < 6:275544/128‑1 (MQ=255) cccGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCg > 5:275544/1‑128 (MQ=255) cccGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTg < 6:20641/148‑1 (MQ=255) cccGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGa < 4:263367/149‑1 (MQ=255) gCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGTTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCg < 8:66217/149‑1 (MQ=255) cTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTgg > 2:112438/1‑149 (MQ=255) | CCGGTTTCAGGGTAACGGCCGACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAA‑GAACTTGTGCT‑GGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGG > NC_002947/6098563‑6098856 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |