| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,129,160 | A→C | 5.1% | intergenic (+22/+45) | PP_5376 → / ← PP_5377 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,129,160 | 0 | A | C | 5.1% | 234.0 / 3.5 | 79 | intergenic (+22/+45) | PP_5376/PP_5377 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (40/34); new base C (2/2); total (42/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.70e-01 | |||||||||||
TGTGACCTCGACCCGGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAG > NC_002947/6129015‑6129307 | tgtgACCTCGACCCGGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGaaaa > 3:37313/1‑149 (MQ=255) ccTCGACCCGGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGgcg > 4:364384/1‑149 (MQ=255) tCGACCCGGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGCAAACGgcgct > 6:169161/1‑148 (MQ=255) tCGACCCGGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGcc > 5:193036/1‑149 (MQ=255) ccGGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTaa > 8:323099/1‑148 (MQ=255) cGGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTaaaa < 2:293422/149‑1 (MQ=255) cTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGtt > 5:67467/1‑149 (MQ=255) tgACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTg < 2:303915/148‑1 (MQ=255) cGTGATTCCTGCGCAAATGACCTATTAAGACTCGACAGGCAAGATCAACATTCTCGAATACCTCGCAGCTGGAATCAATTGCCGAGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGCAAACGGCGCTTTTAAGGCGCCGTTTTCGtt < 4:224631/149‑1 (MQ=38) gggctGCCTGCGCAAATGACCTATGAAGACTCGACAGCCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTg < 8:128340/145‑1 (MQ=255) gTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAC‑CGCAAACGGCGCTTTTAAGGCGCCGTTTTCGttt < 5:169161/149‑2 (MQ=255) gATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTgg > 3:61798/1‑148 (MQ=255) gATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTg < 1:333776/147‑1 (MQ=255) aTGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCAGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTggg > 7:172837/1‑148 (MQ=255) gCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGaa > 1:267644/1‑148 (MQ=255) ccTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGaaa‑a > 8:330225/1‑149 (MQ=255) gcAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTg < 6:235365/149‑1 (MQ=255) cAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTgg < 4:168604/149‑1 (MQ=255) aaaTGACCTATTAATACTCGAAACGCAAGCTCAACATTCTAGTATACCGCGCACCTTGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTTAATTCTGTCCAAATCGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTgg < 1:280816/149‑1 (MQ=255) aaaTGACCTATGAAGACTCGCCAGGCAAGCTCAACATTCTCGAATACCGCGCCGCTGGCATGAAGTGCCGCGGGCA‑‑AAAGTGCGCGCTGAATGCTCTCCACA‑CGAAAACGGCGCAGTACAAGCGCCGTTTCAGTTGGGACG‑ACGGAggg > 2:327072/1‑149 (MQ=255) aaaTGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTggg > 2:18614/1‑149 (MQ=255) tGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGc < 2:267644/147‑1 (MQ=255) tGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGc < 7:103276/147‑1 (MQ=255) aGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGa < 6:382796/149‑1 (MQ=255) cTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATAc > 5:137401/1‑149 (MQ=255) gACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAGGAAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATAct > 1:300644/1‑149 (MQ=255) aGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGTCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTg < 5:47473/133‑1 (MQ=255) aGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGTCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTg > 6:47473/1‑133 (MQ=255) aGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGttt > 2:361238/1‑108 (MQ=255) aGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCAc < 3:364384/149‑1 (MQ=255) tCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACtt > 7:197966/1‑148 (MQ=255) tCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACtt > 1:93861/1‑148 (MQ=255) aaCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCAt > 5:360709/1‑149 (MQ=255) aaCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCAt > 7:95741/1‑149 (MQ=255) aaCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCAt > 8:292380/1‑149 (MQ=255) cATTCACGTATACCGCGCACCTGTCATTAATTGCGTCGGCCA‑‑TAATTGAGCTCTGATAGGTGTCCACA‑CGAAAACCGCGCCTTAAAAGCGCCGTTTGCGTTGGTATA‑CCGGTGGGGCAGTGGCCTGGATACTCTTCAACGTCTTCa < 8:185656/146‑1 (MQ=255) ttCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCg < 7:292380/149‑1 (MQ=255) tctcGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAACACGGTGGGTCAGTGGCCTGGATActc < 1:2975/131‑1 (MQ=255) tctcGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATActc > 2:2975/1‑130 (MQ=255) tcGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGt > 6:362036/1‑115 (MQ=255) tcGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGt < 5:362036/115‑1 (MQ=255) tcGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTcc > 4:169658/1‑149 (MQ=255) gAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGc > 4:352413/1‑149 (MQ=255) gcgcAGCTGGCATCAATTGCCGCTGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt < 3:352413/149‑1 (MQ=255) aGCTTGCATCAATTGCCGCTGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTga < 5:207563/147‑1 (MQ=255) gCTGGCATCAATTGCCGCGGACA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCTGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGAc < 4:37313/149‑1 (MQ=255) gCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGa < 6:137401/148‑1 (MQ=255) gCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGAt < 4:61798/149‑1 (MQ=255) gCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGAt < 6:360709/149‑1 (MQ=255) aaTTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGAcc < 1:18614/148‑1 (MQ=255) aTTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAACCGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTg < 2:300644/149‑1 (MQ=255) aTTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTg < 8:95741/149‑1 (MQ=255) ttGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGagtcgg > 1:333897/1‑144 (MQ=255) cgcgGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATg > 2:267406/1‑149 (MQ=255) cgcgGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATg > 3:295861/1‑149 (MQ=255) ccA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCAt > 1:177339/1‑147 (MQ=255) ccA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCAt > 3:145140/1‑147 (MQ=255) ccA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATga < 4:295861/149‑1 (MQ=255) cA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCAt > 3:307398/1‑146 (MQ=255) cA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGAACGAGGACGTGGTATGCAt > 8:124701/1‑146 (MQ=255) cA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACAAATTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTAGGCaa > 3:283266/1‑145 (MQ=255) a‑‑aaaTTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATgaga < 1:267406/149‑1 (MQ=255) a‑‑aaaTTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACCGTCGGTCAGAGGCCTGGATACTCAGCAACCACTTCATCCCGTCCCCTCTTGTTGAGACCGAAGACCTGCTATGCATga > 1:388222/1‑147 (MQ=255) aaaTTGATCTCTGAATGCTGTCCAAA‑CGTATTCGGCGCCTTAAATGCGCGGTTTGCGTTGGGAAA‑ACGGTGGGTGAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTATTGTTGAGACCGATGAGCTGGTATGCATgagt < 2:388222/148‑2 (MQ=255) aaaTTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCGGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATgagag < 3:239401/149‑1 (MQ=255) aaTTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATga < 2:55709/145‑1 (MQ=255) aaTTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATga > 1:55709/1‑145 (MQ=255) aTTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCGGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGac < 6:67467/149‑1 (MQ=255) aGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCa < 6:193036/149‑1 (MQ=255) aTGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGGCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACtt < 8:172837/148‑1 (MQ=255) cTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATcc > 3:218989/1‑141 (MQ=255) cTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATcc < 4:218989/141‑1 (MQ=255) ccaa‑CGCAAACGGCGCTTTTAAGGCGCCGTTTTCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTg > 5:172236/3‑149 (MQ=39) cAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCt < 2:177339/148‑1 (MQ=255) cAAA‑CGAAAACGGCGCCTTAAAAGAGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTATTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTg > 5:145014/1‑149 (MQ=255) aaa‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCTACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTg > 3:221941/1‑148 (MQ=255) aaa‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCACCCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTg > 5:113908/1‑148 (MQ=255) aaa‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACATg > 3:108994/1‑148 (MQ=255) cGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAAGCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACAATCCACTTCCATACCTGga > 7:306814/1‑147 (MQ=255) gAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGagag > 8:142171/1‑149 (MQ=255) | TGTGACCTCGACCCGGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCA‑‑AAATTGAGCTCTGAATGCTGTCCAAA‑CGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAA‑ACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAG > NC_002947/6129015‑6129307 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |