Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,040,593 A→T 10.0% intergenic (+29/+13) PP_0899 → / ← PP_0900 ferredoxin reductase/PAP2 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,040,5930AT10.0% 136.0 / 6.0 50intergenic (+29/+13)PP_0899/PP_0900ferredoxin reductase/PAP2 family protein
Reads supporting (aligned to +/- strand):  ref base A (20/25);  new base T (2/3);  total (22/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.52e-01

CAGACGGTGGCGCTGCTGTGTGGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGACAGGAAGTGCGCCC  >  NC_002947/1040445‑1040736
                                                                                                                                                    |                                                                                                                                               
cAGACGGTGGCGCTGCTGTGTGGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCaaa                                                                                                                                                 <  4:146852/149‑1 (MQ=255)
       gggCGCTGCTGTGTGGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTGCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGccc                                                                                                                                          <  5:280807/148‑1 (MQ=255)
           gctgctGTGTGGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCctct                                                                                                                                      >  7:148838/1‑149 (MQ=255)
             tgctgTGTGGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCtt                                                                                                                                     >  2:186084/1‑148 (MQ=255)
               ctgTGTGGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCa                                                                                                                                  >  1:162838/1‑149 (MQ=255)
               ctgTGTGGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCa                                                                                                                                  <  7:255543/149‑1 (MQ=255)
               ctgTGAGGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCTTTGCGGCCCttcgca                                                                                                                                    <  1:357387/147‑4 (MQ=255)
                  tgtgGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCTTGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCGTGAGTAGCATTTGAAGTGCGACGGGCCGCAAAGCGGCCCCTCGTTCATgc                                                                                                                               >  8:64012/1‑149 (MQ=255)
                  tgtgGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAGGGGCCGCTTTGCGGCCCttcgcacttc                                                                                                                                <  2:320001/148‑8 (MQ=255)
                    tgGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATgcgg                                                                                                                             <  2:184990/149‑1 (MQ=255)
                        gCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGgcgct                                                                                                                         <  4:376801/149‑1 (MQ=255)
                        gCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGAGGCCCCTCTTTCATGCGgcgct                                                                                                                         <  4:57861/149‑1 (MQ=255)
                          aCCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGgcgctgc                                                                                                                       <  4:126286/149‑1 (MQ=255)
                                 aGTGTGGAGAGGTGTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGc                                                                                                                <  8:219216/149‑1 (MQ=255)
                                    gtCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGAc                                                                                                             >  2:84008/1‑149 (MQ=255)
                                            gTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCAGTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCt                                                                                                     <  5:76142/149‑1 (MQ=255)
                                                 cccGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGcc                                                                                                >  4:25609/1‑149 (MQ=255)
                                                   cGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAg                                                                                              <  8:148838/149‑1 (MQ=255)
                                                     aCGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGcc                                                                                            <  2:194369/149‑1 (MQ=255)
                                                            ttCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCgg                                                                                                                                             >  3:158494/1‑93 (MQ=255)
                                                            ttCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCgg                                                                                                                                             <  4:158494/93‑1 (MQ=255)
                                                              cATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGa                                                                                    <  2:136867/148‑1 (MQ=255)
                                                               aTGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATa                                                                                  <  5:221002/149‑1 (MQ=255)
                                                                  gCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATaga                                                                                <  4:174402/148‑1 (MQ=255)
                                                                       ggTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAg                                                                                              >  6:288165/1‑129 (MQ=255)
                                                                        gTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAg                                                                         >  7:349624/1‑149 (MQ=255)
                                                                         tACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGaa                                                                             >  2:94986/1‑144 (MQ=255)
                                                                         tACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGaa                                                                             <  1:94986/144‑1 (MQ=255)
                                                                         tACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAgg                                                                        <  1:186084/149‑1 (MQ=255)
                                                                               ggggACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAACGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATAc                                                                  <  5:379465/149‑1 (MQ=255)
                                                                                       gtgtTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCaa                                                          >  2:201690/1‑149 (MQ=255)
                                                                                        tgtTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAAt                                                         <  2:162838/149‑1 (MQ=255)
                                                                                                 aTGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAAc                                                <  8:73931/149‑1 (MQ=255)
                                                                                                      ttCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATc                                                        >  2:80746/1‑136 (MQ=255)
                                                                                                      ttCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATc                                                        <  1:80746/136‑1 (MQ=255)
                                                                                                                  gCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCACGTAATACGACCCCAAACCGATCCACCAGCAGAACACTGCCGt                               >  8:188269/1‑149 (MQ=255)
                                                                                                                     tGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCca                            >  4:29803/1‑149 (MQ=255)
                                                                                                                        gTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCcacac                         <  1:84008/149‑1 (MQ=255)
                                                                                                                              tttGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATtgt                    >  7:146660/1‑148 (MQ=255)
                                                                                                                                 gAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATagag                                                                               >  7:357709/1‑86 (MQ=255)
                                                                                                                                 gAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATagag                                                                               <  8:357709/86‑1 (MQ=255)
                                                                                                                                     tGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCcacac                         <  6:131660/136‑1 (MQ=255)
                                                                                                                                     tGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCcacac                         >  5:131660/1‑136 (MQ=255)
                                                                                                                                       cGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGACAGGaa          <  8:349624/149‑1 (MQ=255)
                                                                                                                                        gaggggCCGCTTTGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGCCCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGACAGGAAg         >  5:277463/4‑149 (MQ=255)
                                                                                                                                        gaggggCCGCTTTGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGAc               <  6:244541/140‑1 (MQ=255)
                                                                                                                                        gaggggCCGCTTTGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGAc               >  5:244541/4‑143 (MQ=255)
                                                                                                                                        gAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGACAGGAAg         >  5:122395/1‑149 (MQ=255)
                                                                                                                                             gCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGACAGGAAGTgcgc    <  3:25609/149‑1 (MQ=255)
                                                                                                                                              ccGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCGCCGCCGATAGAGAACCAGGTAATACGACCCCCATCCGAGCACCCAGCAGAACACTGCCGTCCACACATTGTGCGACCGGAAGTgcgca   >  8:248057/1‑148 (MQ=255)
                                                                                                                                               cGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGACAGGAAGTGCGccc  >  6:30862/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                               
CAGACGGTGGCGCTGCTGTGTGGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGACAGGAAGTGCGCCC  >  NC_002947/1040445‑1040736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑