Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 157,491 A→C 7.3% F79V (TTC→GTC)  citN ← citrate transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947157,4910AC 7.3% 158.5 / 4.7 55F79V (TTC→GTC) citNcitrate transporter
Reads supporting (aligned to +/- strand):  ref base A (19/32);  new base C (2/2);  total (21/34)
Fisher's exact test for biased strand distribution p-value = 6.32e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.51e-01

TCGGCAGCATGGCGGCGCAGCAGATCATGTAGGTGGTGGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAGCATCATGGGGCCGATCTTGGCGGAAAAACCACCGAACAGGGCGAACAGGATCGGTACCAG  >  NC_002947/157344‑157638
                                                                                                                                                    |                                                                                                                                                   
tCGGCAGCATGGCGGCGCAGCAGATCATGTAGGTGGTGGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGaa                                                                                                                                                     >  6:157751/1‑148 (MQ=255)
tCGGCAGCATGGCGGCGCAGCAGATCATGTAGGTGGTGGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGaa                                                                                                                                                     >  4:357672/1‑148 (MQ=255)
  ggCAGCATGGCGGCGCAGCAGATCATGTAGGTGGTGGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACa                                                                                                                                                   <  5:373057/148‑1 (MQ=255)
    cagcaTGGCGGCGCAGCAGATCATGTAGGTGGTGGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGc                                                                                                                                                <  2:193415/149‑1 (MQ=255)
     agcaTGGCGGCGCAGCAGATCATGTAGGTGGTGGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCTGTTCGACCCGGcc                                                                                                                                               <  2:375974/149‑1 (MQ=255)
      gcaTGGCGGCGCAGCAGATCATGTAGGTGGTGGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCg                                                                                                                                              <  6:30110/149‑1 (MQ=255)
         tGGCGGCGCAGCAGATCATGTAGGTGGTCGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCTGTTCGACCCGGCCgttc                                                                                                                                           <  7:109193/149‑4 (MQ=255)
          ggcggaGAAGCAGCTCATGTAGGTGGTGGCACCGTCACCTTCGAGCGAGACCACAAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGAGGATAGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAAt                                                                                                                                          >  4:329187/1‑149 (MQ=255)
           gcggcgCAGCAGATCATGTAGGTGGTGGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATc                                                                                                                                         <  5:157751/149‑1 (MQ=255)
           gcggcgCAGCAGATCATGTAGGTGGTGGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATc                                                                                                                                         <  3:357672/149‑1 (MQ=255)
             ggcgCAGCAGATCATGTAGGTGGTGGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATc                                                                                                                                         >  1:112090/1‑148 (MQ=255)
                     agATCATGTAGGTGGTGGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAgg                                                                                                                               >  5:231638/1‑149 (MQ=255)
                             tAGGTGGTGGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGaaa                                                                                                                         >  8:260406/1‑147 (MQ=255)
                               ggtggtGGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATaga                                                                                                                     <  8:113276/149‑1 (MQ=255)
                               ggtggtGGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATaga                                                                                                                     <  6:76933/149‑1 (MQ=255)
                               ggtggtGGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATaga                                                                                                                     <  2:112090/149‑1 (MQ=255)
                                 tggtggCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAgg                                                                                                                   <  1:78462/149‑1 (MQ=255)
                                  ggtggCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGa                                                                                                                  >  5:108054/1‑149 (MQ=255)
                                   gtggCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGag                                                                                                                 <  5:271827/149‑2 (MQ=255)
                                     ggCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCCGAATCGATCATAAGGGCGAAATAGAGGATgc                                                                                                               >  7:333040/1‑148 (MQ=255)
                                      gCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGc                                                                                                              <  2:195104/149‑1 (MQ=255)
                                           gtcaccgtcGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACa                                                                                                         >  2:41930/1‑149 (MQ=255)
                                            tcaccgtcGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACAt                                                                                                        <  2:382088/149‑1 (MQ=255)
                                                  tcGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATaga                                                                                                                     >  2:14743/1‑130 (MQ=255)
                                                  tcGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATaga                                                                                                                     <  1:14743/130‑1 (MQ=255)
                                                    gagcgagACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCa                                                                                                >  8:322292/1‑149 (MQ=255)
                                                         agaCCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAAc                                                                                                          >  6:237740/1‑134 (MQ=255)
                                                         agaCCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAAc                                                                                                          <  5:237740/134‑1 (MQ=255)
                                                          gaCCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCgg                                                                                          <  7:322292/149‑1 (MQ=255)
                                                           accaccAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGAGAAATAGAGGATGGCGAACATCAGCATCACGCCgg                                                                                          >  5:265593/1‑148 (MQ=255)
                                                                caGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTg                                                                                    >  8:67759/1‑149 (MQ=255)
                                                                   ggCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGa                                                                                 <  6:265593/149‑1 (MQ=255)
                                                                          tACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGc                                                                           <  6:108054/149‑1 (MQ=255)
                                                                           actggtgTGCCGACCGAGACTTTAAGCGGATCTCCCTTGACCAGCTTTAGGATTTTGCGTACGGCCGGGTCGAAAAGGCCGGAATCGATAATCAGTTCGAAATTGAGGATGGCGAACATCAGCATCACGCCGGTAGTTGCGTGCTTGc                                                                           <  8:333040/142‑1 (MQ=255)
                                                                                 gTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGcc                                                                    >  4:70628/1‑149 (MQ=255)
                                                                                  tGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGccc                                                                   <  1:41930/149‑1 (MQ=255)
                                                                                    ccgaccgaGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCctc                                                                 <  7:260406/149‑1 (MQ=255)
                                                                                      gaccgaGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTa                                                               <  3:372839/149‑1 (MQ=255)
                                                                                      gaccgaGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGACGGCTCGAACAGGCGGGAATCGATCATCAGGGCGAAAAAGAGGATGCCGAACATCAGCATCACGCCGGTTGGTGCGAGCTTCCTGATGCCctc                                                                 >  8:280521/1‑147 (MQ=255)
                                                                                       accgaGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTac                                                              >  6:223415/1‑148 (MQ=255)
                                                                                       accgaGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAg                                                              <  3:237590/149‑1 (MQ=255)
                                                                                        ccgaGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGAt                                                                                                                 >  1:322471/1‑97 (MQ=255)
                                                                                        ccgaGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGAt                                                                                                                 <  2:322471/97‑1 (MQ=255)
                                                                                          gagaCTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGCTCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAGcat                                                           <  2:256103/149‑1 (MQ=255)
                                                                                           agaCTTTCAGCGGTTCGCACTTGACCAGCTTGAGGATCTTGCGTACGGCCGGGTCGAACAGGCCGGAATCGATCATCATGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAGcatc                                                          <  6:195105/149‑1 (MQ=255)
                                                                                                           gCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAGCATCATGGGGCCGATCTTg                                           <  7:67759/148‑1 (MQ=255)
                                                                                                            cccTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAGCATCATGGGGCCGATCTTGGc                                         <  4:345714/149‑1 (MQ=255)
                                                                                                                         tGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAGCATCATGGGGCCGATCTTGGCGGAAAAaccacc                             >  8:306597/1‑148 (MQ=255)
                                                                                                                          gAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAGCATCATGGGGCCGATCTTGGCGGAAAAACCACCg                            >  2:158580/1‑148 (MQ=255)
                                                                                                                                   gCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTTCGAGCTTGCTGATGCCCTCTAGCATCATGGGGCCGATCTTGGCGGAAAAACCACCGAACAg                       <  3:329187/144‑1 (MQ=255)
                                                                                                                                   gCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAGCATCATGGGGCCGATCTTGGCGGAAAAACCACCGAACAgg                      <  7:306597/145‑1 (MQ=255)
                                                                                                                                     ttccGGCCTGTTCGACCCGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAGCATCATGGGGCCGATCTTGGCGGAAAAACCACCGAACAGGGCGaa                 >  3:242114/4‑148 (MQ=255)
                                                                                                                                     ttccGGCCTGTTCGACCCGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAGCATCATGGGGCCGATCTTGGCGGAAAAACCACCGAACAGGGCGaa                 >  6:14011/4‑148 (MQ=255)
                                                                                                                                      aaCGGCCGGGTCTAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAGCATCATGGGGCCGATCTTGGCGGAAAAACCACCGAACAGGGCGAACa               <  6:231638/149‑1 (MQ=255)
                                                                                                                                       aCGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAGCATCATGGGGCCGATCTTGGCGGAAAAACCACCGAACAGGGCGAACAg              <  7:16762/149‑1 (MQ=255)
                                                                                                                                          gCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAGCATCATGGGGCCGAGCTTGGCGGAAAAACCACCGAACAGGGCGAACAGGag           >  6:232061/1‑148 (MQ=255)
                                                                                                                                                  gAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAGCATCATGGGGCCGATCTTGGCGGAAAAACCACCGAACAGGGCGAACAGGATCGGTACCa   <  3:70628/149‑1 (MQ=255)
                                                                                                                                                   aaCAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAGCATCATGGGGCCGATCTTGGCGGAAAAACCACCGAACAGGGCGAACAGGATCAGtccagg  >  3:112251/1‑144 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
TCGGCAGCATGGCGGCGCAGCAGATCATGTAGGTGGTGGCACCGTCACCGTCGAGCGAGACCACCAGGGCCAGTACAGCGGTGCCGACCGAGACTTTCAGCGGATCGCCCTTGACCAGCTTGAGGATCTTGCGAACGGCCGGGTCGAACAGGCCGGAATCGATCATCAGGGCGAAATAGAGGATGGCGAACATCAGCATCACGCCGGTAGGTGCGAGCTTGCTGATGCCCTCTAGCATCATGGGGCCGATCTTGGCGGAAAAACCACCGAACAGGGCGAACAGGATCGGTACCAG  >  NC_002947/157344‑157638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: