| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,580,570 | G→T | 31.9% | A276D (GCC→GAC) | ttgB ← | efflux pump membrane protein TtgB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,580,570 | 0 | G | T | 31.9% | 119.9 / 77.9 | 94 | A276D (GCC→GAC) | ttgB | efflux pump membrane protein TtgB |
| Reads supporting (aligned to +/- strand): ref base G (29/35); new base T (13/17); total (42/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.94e-01 | |||||||||||
GAATACCGCCTTGACTCCCGGCGGGAAGAACGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGG > NC_002947/1580422‑1580713 | gAATACCGCCTTGACTCCCGGCGGGAAGAACGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGCCgg > 4:213534/1‑149 (MQ=255)gAATACCGCCTTGACTCCCGGCGGGAAGAACGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACgg > 5:91865/1‑149 (MQ=255) ccGCCTTGACTCCCGGCGGGAAGAACGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAg < 3:246827/149‑1 (MQ=255) ccGCCTTGACTCCCGGCGGGAAGAACGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAg > 5:347962/1‑149 (MQ=255) ccGCCTTGACTCCCGGCGGGAAGAACGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAg > 1:69413/1‑149 (MQ=255) ccGCCTTGACTCCCGGCGGGAAGAACGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCGTGC‑CGTTGAACTGGGCGCTGACGTCGTAg > 5:342038/1‑149 (MQ=255) ccTTGACTCCCGGCGGGAAGAACGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGttt < 6:91865/149‑1 (MQ=255) tGACTCCCGGCGGGAAGAACGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCa > 4:239482/1‑149 (MQ=255) gACTCCCGGCGGGAAGAACGGTTCCAGGCCTTTGAAGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGTCGGCGTAGTTTTCa < 1:255125/148‑1 (MQ=255) aCTCCCGGCGGGAAGAACGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCAc < 8:126675/148‑1 (MQ=255) tCCCGGCGGGAAGAACGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCAcccc > 6:348653/1‑149 (MQ=255) cccGGGGGGACGCCCGGGGCCCGGCCGTTGATGGGCTCGCGCAGGGCCTGGGCGGTGCCCAGCGCGGGGGCGCCGTTTGCCAGTTTTCCCGCCCGGCCGGAAGCCGGCTTGC‑CGTTGACCTGGGCGCTGCCGGCGTAGTTTTCAccccc < 8:107316/149‑1 (MQ=255) cggcggGAAGAACGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGtt > 4:329536/1‑138 (MQ=255) cggcggGAAGAACGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGtt < 3:329536/138‑1 (MQ=255) ggcggGAAGAACGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGTCGGCGTAGTTTTCACCCCCCAg > 5:280684/1‑149 (MQ=255) ggcggGAAGAACGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGGCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAg < 7:255196/149‑1 (MQ=255) gaaCGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACtt > 5:318226/1‑149 (MQ=255) aaCGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTg > 8:281514/1‑149 (MQ=255) aaCGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTg > 1:321748/1‑149 (MQ=255) aCGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTgg < 1:63480/149‑1 (MQ=255) ggTTCCAGGCCTTTGATGGTCTCGCGCAGTGCGTTGGCGGTGTCGAGCGCGTTGGCGCCGGTTGCGAGTTTTTCCGGCATGCCGGAAGCCGGGTTGG‑CGTTGAACTGGGCGCTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGc < 5:4206/149‑1 (MQ=255) ggTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGc < 3:239482/149‑1 (MQ=255) ggTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGc < 5:348653/149‑1 (MQ=255) aGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATc < 5:387720/149‑1 (MQ=255) ggCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCg < 1:146940/149‑1 (MQ=255) cTTTGATGGTCTCGCGCAGTGCCTTGGCGGGGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCGAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGccc < 6:318245/149‑1 (MQ=255) tttGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTCCTTGGGCGACATCGcc > 6:244109/1‑147 (MQ=255) aTGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGgcg < 5:38897/149‑1 (MQ=255) aTGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGATGTCGCCCaatta < 6:48940/149‑5 (MQ=255) aTGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGgcg > 4:120269/1‑149 (MQ=255) aTGGTCTCCCGGAGTGCCTTGGGGGTGTCCAGCGCGTTGGCGCCGGGTGCCATTTTTACCGCCAGGCCGGAAGCCGGCTTGCTGGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGATGTCGCCCaagt < 1:311280/149‑4 (MQ=255) ggactcGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCAACTTGGGCGACAACGCCCAGGCGCa > 2:341721/4‑149 (MQ=255) gTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCAc < 6:280684/149‑1 (MQ=255) tctcGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCAcc > 3:95854/1‑149 (MQ=255) tctcGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCAcc > 3:313809/1‑149 (MQ=255) ctcGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCt < 3:213534/149‑1 (MQ=255) tcGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCtg > 7:189713/1‑149 (MQ=255) gcgcAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCtgt > 5:253582/1‑148 (MQ=255) gcgcAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCtgt > 3:141817/1‑148 (MQ=255) gcgcAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCtgt > 5:40933/1‑148 (MQ=255) gcgcAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCtgt < 1:257206/148‑1 (MQ=255) gcgcAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCtgt > 2:257206/1‑148 (MQ=255) cAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGT‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAAc > 7:133324/1‑149 (MQ=255) aGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAAcc > 6:391476/1‑149 (MQ=255) aGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGCAcc > 3:259087/1‑149 (MQ=255) cTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCtt < 2:69413/149‑1 (MQ=255) ggCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCttt < 2:172095/147‑1 (MQ=255) ggCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTttg < 3:120269/148‑1 (MQ=255) gCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACGGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTttgtt < 4:95854/149‑1 (MQ=255) gCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTttgtt < 4:313809/149‑1 (MQ=255) cGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTttgttg < 8:189713/149‑1 (MQ=255) ggTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGa < 5:56633/149‑1 (MQ=255) tgtCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGAcc < 5:391476/149‑1 (MQ=255) cAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCGGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCtt > 6:289061/1‑147 (MQ=255) cAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCtt > 4:56494/1‑147 (MQ=255) cAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGa < 7:281514/149‑1 (MQ=255) cAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTg < 2:258163/148‑1 (MQ=255) cAGCGCGTTGGCGCCGGTTGCCAGTTTTAACGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGCGCGCTGACGGCGTAGTTTTCACCCCCCAGACCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCtt > 2:31014/1‑147 (MQ=255) cgcgTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCa < 2:321748/149‑1 (MQ=255) ggCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATa < 5:293201/148‑1 (MQ=255) gcgcCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATAct > 5:7117/1‑149 (MQ=255) gcgaCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAAATGGGCGCTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATAct > 2:138466/1‑149 (MQ=255) cgcCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATActc < 6:40933/149‑1 (MQ=255) gTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGgc > 2:170151/1‑103 (MQ=255) gTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGgc < 1:170151/103‑1 (MQ=255) cAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCt > 1:293647/1‑149 (MQ=255) ttACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGc > 4:26525/1‑125 (MQ=255) ttACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGc < 3:26525/125‑1 (MQ=255) aCCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTcggcgg < 5:18315/148‑1 (MQ=255) aCCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGt > 2:236593/1‑149 (MQ=255) ccGCCAGGCCGGAAGCGGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCTCCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGtt < 1:341721/149‑1 (MQ=255) cGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGttt > 1:145828/1‑149 (MQ=255) cGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGttt > 2:92211/1‑149 (MQ=255) gCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGAAGGATACTCTCGAACTGCTCGGCGGTTTg > 5:33634/1‑149 (MQ=255) ccAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACGTTGAGCGGGATAATCGCGAAATGGGCGGCGGTTTGc > 4:142143/1‑149 (MQ=255) ccAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGc < 1:92211/149‑1 (MQ=255) aGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAg < 3:59336/149‑1 (MQ=255) cGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTggg > 8:239770/1‑66 (MQ=255) cGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTggg < 7:239770/66‑1 (MQ=255) cGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCgg < 6:253582/149‑1 (MQ=255) cGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCgg < 5:203953/149‑1 (MQ=255) ccGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTg > 2:43642/1‑149 (MQ=255) cGGCTTGT‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGc < 8:133324/149‑1 (MQ=255) c‑cGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGTCCTACTTGGGCGACTTCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCgatga < 6:347962/148‑1 (MQ=255) c‑cGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCgatga < 6:342038/148‑1 (MQ=255) cGTTGAACTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGatgatg < 6:7117/149‑1 (MQ=255) gTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGttt < 1:43735/125‑1 (MQ=255) gTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGttt > 2:43735/1‑125 (MQ=255) gAACTGGGCGCTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGAtggtg < 4:141817/148‑1 (MQ=255) gAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGAtggtg < 2:293647/148‑1 (MQ=255) aaCTGGGCGCTGACGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGc > 1:62416/1‑149 (MQ=255) aCTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGACCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTNTGCAGGCGGGTCTTGCCGATGATGGTGGCg < 1:31014/149‑1 (MQ=255) ggCTCTGACGGCGTAGTTTTCACCCCCCAGGCCTACATGGGCGACAACGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGtt < 6:33634/147‑1 (MQ=255) cgcTGTCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGc > 6:82902/1‑149 (MQ=255) gcTGACGGCGTATTTTTCACCACCCAGGCCTACTTGGGCGAGATCGCCCAGGCGCACCTGTGAACCGACGCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGAGTTCAg > 1:315937/1‑149 (MQ=255) aCGTCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTgg < 3:56494/147‑1 (MQ=255) | GAATACCGCCTTGACTCCCGGCGGGAAGAACGGTTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGC‑CGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCG‑‑TCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGG > NC_002947/1580422‑1580713 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |