Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,594,490 | G→T | 9.8% | G311G (GGC→GGA) | kgtP ← | alpha‑ketoglutarate permease |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,594,490 | 0 | G | T | 9.8% | 145.5 / 5.0 | 50 | G311G (GGC→GGA) | kgtP | alpha‑ketoglutarate permease |
Reads supporting (aligned to +/- strand): ref base G (20/25); new base T (3/2); total (23/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.51e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.52e-01 |
GAGGTATAGCCGCTTACGATGATCAGTGCGGCCATGATCAGGAAGAACGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGTGTTGACCAGGTATTTCTGCATGTAGGTGGTGTAGGTGTAGAAG > NC_002947/1594347‑1594637 | gAGGTATAGCCGCTTACGATGATCAGTGCGGCCATGATCAGGAAGAACGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGcc < 8:101320/146‑1 (MQ=255) gAGGTATAGCCGCTTACGATGATCAGTGCGGCCATGATCAGGAAGAACGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGcc > 7:101320/1‑146 (MQ=255) aGGTATAGCCGCTTACGATGATCAGTGCGGCCATGATCAGGAAGAACGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGCCGCCGTCCGATc < 1:36093/149‑1 (MQ=255) aGGTATAGCCGCTTACGATGATCAGTGCGGCCATGATCAGGAAGAACGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATc < 4:152913/149‑1 (MQ=255) gTATAGCCGCTTACGATGATCAGTGCGGCCATGATCAGGAAGAACGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGACCtt < 2:225262/149‑1 (MQ=255) ccGCTTACGATGATCAGTGCGGCCATGATCAGGAAGAACGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCgg > 5:49642/1‑148 (MQ=255) gCTTACGATGATCAGTGCGGCCATGATCAGGAAGAACGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACa < 2:56621/149‑1 (MQ=255) tgatCAGTGCGGCCATGATCAGGAAGAACGCACCCCACCAGGTCTGGATGGTGTGCAGGTTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCTATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCg < 8:207513/149‑1 (MQ=255) tCAGTGCGGCCATGATCAGTAAGAACGCACCACAACAGGTCTGGATGGTGTGCAGGGTTCTGATGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGatc < 3:81952/149‑1 (MQ=255) gTGCGGCCATGATCAGGAAGAACGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGATGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGatcatc > 3:91235/1‑149 (MQ=255) ccATGATCAGGAAGAACGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGc < 5:174723/149‑1 (MQ=255) cATGATCAGGAAGAACGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGTCCACCGATCATCGGCTg > 7:311238/1‑147 (MQ=255) aTGATCAGGAAGAACGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAg < 6:380412/149‑1 (MQ=255) gaagaaCGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATg > 2:226508/1‑148 (MQ=255) agaaCGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCTAAGGCGATCAGGATCGGACGGCGGCCg < 4:316488/104‑1 (MQ=255) gaaCGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATgaaca < 1:226508/149‑1 (MQ=255) aCGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATgaacagg < 6:315394/149‑1 (MQ=255) aCGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCAACGGCTTCAGGCACATgaacag < 6:49642/148‑1 (MQ=255) ggTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTggcgg > 5:18069/1‑149 (MQ=255) gATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGcc > 5:381090/1‑145 (MQ=255) gATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGcc > 1:351954/1‑145 (MQ=255) ggTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGAtgg > 3:307996/1‑149 (MQ=255) tgCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATggtggt < 6:342772/149‑1 (MQ=255) cTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCAc < 4:307996/148‑1 (MQ=255) gAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGAtgg < 4:24942/134‑1 (MQ=255) gAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGAtgg > 3:24942/1‑134 (MQ=255) aGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGAt < 3:261812/149‑1 (MQ=255) ggATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATg < 6:381090/149‑1 (MQ=255) gATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGc < 2:351954/149‑1 (MQ=255) tGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCt > 5:274813/1‑148 (MQ=255) ggACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGAt < 1:155146/142‑1 (MQ=255) ggACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACACCGTGGCGGCCGAGATCCTGGTCGAGTCACTGAt > 2:155146/1‑142 (MQ=255) gACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGCTCATCGGCTGCCGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGc > 5:292015/1‑149 (MQ=255) ggTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCa > 4:381058/1‑149 (MQ=255) agAACAGGGTGCCGAGCACAACGAAGGCGATCAGGATCGGACGGAGTCCGATCTTGACGGACAGACCAACGATCATCGGGTGCAGGCACATGAACATGAACAGCGTGGCGGCAGAGAAGGGGCTCGAGTCACAGATCCGCCTGccaaag > 4:87498/2‑145 (MQ=255) aCAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGc < 3:179082/141‑1 (MQ=255) aCAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGc > 4:179082/1‑141 (MQ=255) ggTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGTGTTGa < 2:254111/149‑1 (MQ=255) gAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACCGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGAGTTGACCAgg > 7:76546/1‑148 (MQ=255) acCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGTGTTGACCAGGTATTTCt > 2:72247/1‑149 (MQ=255) cGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGTGTTGACCAGGTATTTCTg > 5:1982/1‑148 (MQ=255) cGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGTGTTGACCAGGTATTTCTGc < 4:91235/149‑1 (MQ=255) gAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGTCCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGTGTTGACCAGGTATTTCTGCa < 8:311238/149‑1 (MQ=255) aaGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGTGTTGACCAGGTATTTCTGCAt < 1:72247/149‑1 (MQ=255) aagATCGGCCGCCGTCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGTGTTGACCAGGTATTTCTGCATGTAggtggt > 3:16580/3‑149 (MQ=255) aGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGTGTTGACCAGGTATTTCTGCATGTAggtggt < 6:274813/149‑1 (MQ=255) gATCGGCCGCCGTCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGTGTTGACCAGGTATTTCTGCATGTAGgtggtg > 1:268474/1‑148 (MQ=255) gATCGGCCGCCGTCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGTGTTGACCAGGTATTTCTGCATGTAGGTggtgt < 4:16580/149‑1 (MQ=255) gACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGTGTTGACCAGGTATTTCTGCATGTAGGTggtgtaggtg > 7:332668/1‑149 (MQ=255) gACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACAGATGCTCATGCCCACGGTGTTGACCAGGTATTTCTGCATGTAGGTggtgtaggtg > 3:331187/1‑149 (MQ=255) ggcCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGTGTTGACCAGGTATTTCTGCATGTAg < 2:245324/131‑1 (MQ=255) ggcCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGTGTTGACCAGGTATTTCTGCATGTAg > 1:245324/1‑131 (MQ=255) ggcCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGTGTTGACCAGGTATTTCTGCATGTAGGTGGTGTAGGTGTAGAAg < 8:76546/149‑1 (MQ=255) | GAGGTATAGCCGCTTACGATGATCAGTGCGGCCATGATCAGGAAGAACGCACCCCACCAGGTCTGGATGGTGTGCAGGGTGCTGAGGATGGGGACGGTGAACAGGGTGCCGAGCACACCGAAGGCGATCAGGATCGGACGGCGGCCGATCTTGTCGGACAGACCACCGATCATCGGCTGCAGGCACATGAACAGGAACAGCGTGGCGGCCGAGATGGTGGTCGAGTCACTGATGCTCATGCCCACGGTGTTGACCAGGTATTTCTGCATGTAGGTGGTGTAGGTGTAGAAG > NC_002947/1594347‑1594637 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |