| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,683,251 | C→G | 11.3% | intergenic (+60/‑171) | recJ → / → PP_1478 | ssDNA‑specific exonuclease RecJ/xenobiotic reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,683,251 | 0 | C | G | 11.3% | 146.3 / 10.1 | 53 | intergenic (+60/‑171) | recJ/PP_1478 | ssDNA‑specific exonuclease RecJ/xenobiotic reductase |
| Reads supporting (aligned to +/- strand): ref base C (26/21); new base G (2/4); total (28/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.04e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.42e-01 | |||||||||||
TTGGCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCGGGCCGGAT > NC_002947/1683111‑1683392 | ttGGCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCt > 3:8497/1‑149 (MQ=255)ttGGCGTACAAGCTGGAGGTGAACGAGTTTCGCGGTAATGAGAGTGTCCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCGCGGGCGGCGCt < 3:199954/149‑1 (MQ=255) ggCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCGCGGGCGACGCTc < 2:284387/148‑1 (MQ=255) ggCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTc > 3:266775/1‑148 (MQ=255) gCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGTGTTTAGCGTCAGGTGCCTGCGTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGa < 4:63363/149‑1 (MQ=255) gCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCg > 2:84047/1‑148 (MQ=255) gCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTCGCGCTGGGGCACAAATCAAGCGCCGCGCGGGCGGCGCTCGa < 6:102267/149‑1 (MQ=255) tACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGAtct > 1:127703/1‑149 (MQ=255) cAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTca > 6:216760/1‑149 (MQ=255) gCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAg < 1:41331/149‑1 (MQ=255) gATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGgcgc > 1:246965/1‑149 (MQ=255) tgtgAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTg < 6:101051/149‑1 (MQ=255) aaCGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCaaa > 2:129970/1‑149 (MQ=255) gTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCGGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGCTCTCACAGGCGCTGGAAACCttt > 4:41010/1‑149 (MQ=255) tttCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTc > 2:161221/1‑149 (MQ=255) cgcgGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGc > 7:152741/1‑149 (MQ=255) tgCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATcc > 5:319307/1‑149 (MQ=255) gTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCc‑‑aca < 5:198953/149‑1 (MQ=255) gatgatTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGaa > 7:344819/1‑149 (MQ=255) atgatTGCGCATATGGAGCCGAGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGaa < 2:246965/148‑1 (MQ=255) tgatTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAAcc > 4:153704/1‑149 (MQ=255) atTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑AAAGAACCTc > 1:113388/1‑149 (MQ=255) ttGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTcc < 5:216760/149‑1 (MQ=255) gcgcATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGCTCTTGCGCTGGGGCACAAATAGAGCGCCGCCCGCGCGGCGCTCGCTCTGCCATGCCCTGCAAAACTTTAGGCGA‑AC‑CCCTAGCCATCCC‑‑ACCGCACCTcacc > 8:76213/1‑149 (MQ=255) gcATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTcccccc > 3:259427/1‑149 (MQ=255) gcATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTcccccc > 3:254426/1‑149 (MQ=255) ggAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAAt > 7:160419/1‑149 (MQ=255) gAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCAt < 8:48863/124‑1 (MQ=255) gAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCAt > 7:48863/1‑124 (MQ=255) ccGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTgg < 4:114051/149‑1 (MQ=255) ccGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTgg < 8:344819/149‑1 (MQ=255) gcgcTGAGTTTAGCGTCATGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑TCAGAACCTCCCCCCACCAATCTGGTc < 6:234650/149‑1 (MQ=255) aGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGAc < 4:8497/148‑1 (MQ=255) gTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCgg > 8:71627/1‑149 (MQ=255) cctTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCgg < 1:161221/148‑1 (MQ=255) tGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCGGGc > 2:41041/1‑147 (MQ=255) ggATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTa < 3:95379/121‑1 (MQ=255) ggATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTa > 4:95379/1‑121 (MQ=255) gATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCGGGCCAgg > 2:22316/1‑149 (MQ=255) gATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCGGGCCAgg > 6:341740/1‑149 (MQ=255) gcgcTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCGGGCCAGGGAt < 2:113388/146‑1 (MQ=255) cgcTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGTCCTCATTAATGACCGGCACCGGGCCAGGGAtgt < 1:41041/148‑1 (MQ=255) gggCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCGGGCCAGGGATGTGCACtt < 4:266775/148‑1 (MQ=255) ggCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGa < 2:127703/149‑1 (MQ=255) ggCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGa < 5:341740/149‑1 (MQ=255) aTCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGa > 6:390798/1‑142 (MQ=255) aTCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGa < 5:390798/142‑1 (MQ=255) gAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCGGGc > 7:15761/1‑149 (MQ=255) gAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCGGGc < 1:22316/149‑1 (MQ=255) aGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAAt < 7:267888/107‑1 (MQ=255) aGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAAt > 8:267888/1‑107 (MQ=255) gccgcgCGCGCGGGGCTCGATCTCTCAGTCGCTGTTAAACTTTAGGCGATACTCCCTCTCGCTCCCAGATATAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCGGGc < 1:320335/149‑1 (MQ=255) gccgccCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCGGGCCGGa > 1:389254/1‑149 (MQ=255) ccgcccgcGCGGCGCTCGATCTCACCGGCGCCGCCAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTCGTCTAGT‑CTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCGGGCCGGAt < 8:160419/149‑1 (MQ=255) ccgcccgcGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTGTAGT‑CTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCGGGCCGGAt > 6:252498/1‑149 (MQ=255) cgcccgcGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCgg < 7:3166/114‑1 (MQ=255) cgcccgcGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCgg > 8:3166/1‑114 (MQ=255) | TTGGCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGA‑AC‑CCCTCGCCATCCC‑‑ACAGAACCTCCCCCCACCAATCTGGTCTAGT‑CTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCGGGCCGGAT > NC_002947/1683111‑1683392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |