Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,731,531 | G→A | 6.8% | T780M (ACG→ATG) ‡ | PP_1526 ← | beta‑(1‑3)‑glucosyl transferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,731,531 | 0 | G | A | 6.8% | 175.1 / 2.0 | 59 | T780M (ACG→ATG) ‡ | PP_1526 | beta‑(1‑3)‑glucosyl transferase |
Reads supporting (aligned to +/- strand): ref base G (27/28); new base A (2/2); total (29/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.73e-01 |
CCCAGAAGCGCATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAGGAAGATGATCTTGC > NC_002947/1731388‑1731678 | cccAGAAGCGCATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCg > 1:212089/1‑148 (MQ=255) gcgcATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGGTGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACg < 4:371924/149‑1 (MQ=255) gcgcATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCTTTCTTCCGCACGCCGAAGAACg < 7:57833/149‑1 (MQ=255) gcATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGc < 2:212089/149‑1 (MQ=255) gTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCAtgc > 8:265218/1‑149 (MQ=255) tCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCAtgc < 5:242665/148‑1 (MQ=255) ccGAACTCGGCAGCCCCTGCACCAGGTAGAAACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCAtgctg > 1:36505/1‑149 (MQ=255) aaCTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGctgctg < 2:36505/149‑1 (MQ=255) aCTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTgg < 8:140033/149‑1 (MQ=255) cccTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAAc > 1:272162/1‑148 (MQ=255) cACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATa < 5:145147/147‑1 (MQ=255) aCCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTgg > 8:137815/1‑149 (MQ=255) aCCAAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTgg > 7:317546/1‑149 (MQ=255) cccAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTgg < 1:363685/148‑1 (MQ=255) cAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAAcc > 7:152140/1‑129 (MQ=255) cAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAAcc < 8:152140/129‑1 (MQ=255) ccccACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGa < 2:272162/149‑1 (MQ=255) cATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCgg > 7:209383/1‑149 (MQ=255) tgatgaACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGgaagaa < 3:215604/79‑1 (MQ=255) tgatgaACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGgaagaa > 4:215604/1‑79 (MQ=255) atgaACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGCCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGGAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCa < 4:379417/148‑1 (MQ=255) gaACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAgcg > 4:95151/1‑149 (MQ=255) aaCAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTgaa > 3:76636/1‑92 (MQ=255) aaCAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTgaa < 4:76636/92‑1 (MQ=255) ctctTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTg > 6:79805/1‑149 (MQ=255) tCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCa < 8:334151/136‑1 (MQ=255) tCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCa > 7:334151/1‑136 (MQ=255) cGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGc < 2:251710/149‑1 (MQ=255) gCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCAAGCCCGGCCAGCGCAGCTGCGAAGGCATc > 4:234402/1‑149 (MQ=255) ttCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGc > 4:89709/1‑144 (MQ=255) ttCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGc < 3:89709/144‑1 (MQ=255) ggAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCtt > 3:215753/1‑147 (MQ=255) ggAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCtt > 3:220740/1‑147 (MQ=255) gAAATCGCCACCAGCAACCCATGGCTGTCCGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAg < 7:284694/149‑1 (MQ=255) gAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAAGGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAg < 7:265218/149‑1 (MQ=255) aaaTCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAgg < 7:137815/149‑1 (MQ=255) aaTCGCCACCAGCAACCCATCGCTGTCCGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGt < 2:162093/149‑1 (MQ=255) caccaGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCAccc > 3:122614/1‑149 (MQ=255) caGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCa > 4:263082/1‑149 (MQ=255) caGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCa > 6:52155/1‑149 (MQ=255) aGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCAc > 1:141008/1‑149 (MQ=255) gCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCAtgctgc > 6:236998/1‑51 (MQ=255) gCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCAtgctgc < 5:236998/51‑1 (MQ=255) cAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCg < 8:209383/149‑1 (MQ=255) aaCCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTTCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCACACCg > 8:319186/1‑148 (MQ=255) cATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGTCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTcgg > 6:113305/1‑149 (MQ=255) gCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGt < 3:234402/149‑1 (MQ=255) tCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACa < 4:122614/148‑1 (MQ=255) tCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACa < 3:95151/148‑1 (MQ=255) gccGTTCTTCCGCACGCCGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGa > 6:343927/3‑119 (MQ=255) gccGTTCTTCCGCACGCCGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGa < 5:343927/117‑1 (MQ=255) gCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAgg > 2:121583/1‑147 (MQ=255) cGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGccc < 7:44380/88‑1 (MQ=255) cGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGccc > 8:44380/1‑88 (MQ=255) gTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAGGAAga < 5:79805/149‑1 (MQ=255) gTTCTTCCGCACGCCGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAgg > 4:300753/1‑145 (MQ=255) ttcttcGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAGGAAgat < 5:52155/149‑1 (MQ=255) ttcttcGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCAGCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAGGAAg > 4:225780/1‑147 (MQ=255) cGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAGGAAGATGATCTTGc < 8:317546/149‑1 (MQ=255) | CCCAGAAGCGCATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAGGAAGATGATCTTGC > NC_002947/1731388‑1731678 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |