Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,903,707 | T→G | 10.3% | intergenic (+232/‑39) | PP_1703 → / → nirB | assimilatory nitrate reductase/sulfite reductase/nitrite reductase large subunit |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,903,707 | 0 | T | G | 10.3% | 123.5 / 4.6 | 47 | intergenic (+232/‑39) | PP_1703/nirB | assimilatory nitrate reductase/sulfite reductase/nitrite reductase large subunit |
Reads supporting (aligned to +/- strand): ref base T (17/24); new base G (3/2); total (21/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.40e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GAAGAGGCCGACACAGGCAACCCAGGCAACCCACGCAACCCGATTGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGC > NC_002947/1903560‑1903854 | gAAGAGGCCGACACAGGCAACCCAGGCAACCCACGCAACCCGATTGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCATCCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTc < 1:354987/149‑1 (MQ=255) gAAGAGGCCGACACAGGCAACCCAGGCAACCCACGCAACCCGATTGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTc < 1:147580/149‑1 (MQ=255) ccGACACAGTCAACCCAGGCAACCCACGCAACCCGATTGTCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCCAAGGCGCCTGGAGCTTCGGCTCCa < 6:300/149‑1 (MQ=255) cGACACAGGCAACCCAGGCAACCCACGCAACCCGATTGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAg < 8:337973/149‑1 (MQ=255) cGACACAGGCAACCCAGGCAACCCACGCAACCCGATTGGCACGCTCCCTGCATAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGTCAAAGGCGCCTGGAGCTACGGCTCCat > 7:362322/1‑148 (MQ=255) acacAGGCAACCCAGGCAACCCACGCAACCCGATTGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGgc < 1:20103/149‑1 (MQ=255) tggcaacccaggcaacccaCGCAACCCGATTGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑Ctt > 4:268873/2‑149 (MQ=255) aggcaacccaggcaacccACGCTACCCGATTGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGGTCCAGGCG‑Ctt > 7:244081/1‑149 (MQ=255) aggcaacccaggcaacccACGCAACCCGATTGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCACgcg‑cgt > 1:336420/1‑147 (MQ=255) acccaggcaacccaCGCAACCCGATTGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCCGAAGCTCCAGgc < 2:297491/140‑1 (MQ=255) acccaggcaacccaCGCAACCCGATTGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGACCCGAAGCTCCAGgc > 1:297491/1‑140 (MQ=255) cccaggcaacccaCGCAACCCGATTGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCACCCGGGCCCCCTACCGTGATGAATACCGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑Ctttttttt < 8:292777/149‑1 (MQ=255) ccccccaaccccCCCCACCCTTTTGCCCCGCACCCTTCTTAACCTCCTAAAACAAAAACCCCACTTATCACCGGTTTTCTTTCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑Cttttttttt < 1:316065/144‑1 (MQ=255) aggcaacccaCGCAACCCGATTGGCACGCTCCCTGCTTAACCTCGGATACGACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGa < 7:281433/149‑1 (MQ=255) caacccaCGCAACCCGATTGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCg < 1:32809/149‑1 (MQ=255) caacccaCGCAACCCGATTGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCg < 1:94627/149‑1 (MQ=255) cGCAACCCGATTGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCg < 5:369203/149‑1 (MQ=255) gATTGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGa < 3:268873/149‑1 (MQ=255) ttGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAg < 7:221568/149‑1 (MQ=255) ttAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCg > 1:287635/1‑149 (MQ=255) aTACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACgaga < 2:287635/149‑1 (MQ=255) aacaaAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGa > 1:272331/1‑149 (MQ=255) aaaGCCCACTGATCAACGGCTATCAACCGGGCCCCCTACCGTGTTTAATAAAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTg < 8:244081/149‑1 (MQ=255) aaaGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTg < 3:32827/149‑1 (MQ=255) aaaGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTg > 1:342304/1‑149 (MQ=255) cACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCAtc < 2:342304/149‑1 (MQ=255) cACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGCATCGGCGTATGAAGGCAAAAGCGAGCAGCGGGCAACGAGAGCGACGGGTCAtc > 6:308523/1‑149 (MQ=255) accgCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGACCTTCGGCTCCACCCG‑CATTTTTTTTTATACAGGATAGGCGTAATAAAGGAACAGCGCGCCGCCGGCAACCACAGCCCCTGGGCATCGTAGGCaaa > 4:186331/4‑148 (MQ=255) aCGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTgg > 2:102057/1‑135 (MQ=255) aCGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTgg < 1:102057/135‑1 (MQ=255) aCGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATAGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAAc > 3:296747/1‑149 (MQ=255) cGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACg < 1:136549/149‑1 (MQ=255) cGGCGATCAACCGGGCCCCCTACCGTGATGAATAAAGGCAAAGGCGCCTGGAGCTTCGTCTCCAGGCG‑CTTTTTTTTTGATAGAGGATAGGCTTATGAAAGCAACAGCCAGCAGCGGGCCACGAGAGCACCTCTTCATCGTGGGCaaag > 2:350205/1‑147 (MQ=255) aaCCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATAGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTc > 2:355452/1‑149 (MQ=255) ccGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCgg > 6:73066/1‑149 (MQ=255) ccTTCCGTGATGAATACAGGCAAAGGGGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCAtt < 3:186331/149‑1 (MQ=255) tACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTg < 2:272331/149‑1 (MQ=255) aGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATg < 2:333828/119‑1 (MQ=255) aGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATg > 1:333828/1‑119 (MQ=255) aGGCAAAGGCGCCTGGAGCTTAGGCTCCATGCG‑CTTTTTTTTTGATCCAGGATCGGCTTAAGAAGGAAACCGCGAGCAGCGGGCAACGACCGCCACTGGTCCTCGGCCGCAAAGGCAAGGTCGGCCAACCTTTCGTCGcacaacag > 8:152039/1‑144 (MQ=255) gCAAAGGCGCCTGGATCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTgg < 7:88278/97‑1 (MQ=255) ggCGCGTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTcgcg < 1:367563/149‑1 (MQ=255) gcgcCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGCCTGGTCATCGTCGGCAACGGCATGGTCGGCCCCCATTGCGTCGAACAACTGGTCAGTCgcgg > 7:230689/1‑149 (MQ=255) cgcCTGGAGCCGAAGCTCCAGGCG‑CTTTTTTTTTGATAGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCAACCTCGTCAACGCCATGGTCGGCCAACATTGAGACGAACAACTGGTCAGTAgcgga > 8:249452/1‑148 (MQ=255) gcCTGGAGCCGAAGCTCCAGGCGCCTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCAt < 5:350216/109‑1 (MQ=38) gcCTGGAGCCGAAGCTCCAGGCGCCTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCAt > 6:350216/1‑109 (MQ=38) cTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAg > 5:371362/1‑149 (MQ=255) ttCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAgc > 2:208926/1‑149 (MQ=255) | GAAGAGGCCGACACAGGCAACCCAGGCAACCCACGCAACCCGATTGGCACGCTCCCTGCTTAACCTCGGATACAACAAAGCCCACTGATCAACGGCGATCAACCGGGCCCCCTACCGTGATGAATACAGGCAAAGGCGCCTGGAGCTTCGGCTCCAGGCG‑CTTTTTTTTTGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGC > NC_002947/1903560‑1903854 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |