| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,166,708 | T→A | 12.1% | intergenic (‑552/‑229) | PP_5483 ← / → PP_1921 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,166,708 | 0 | T | A | 12.1% | 112.8 / 5.4 | 45 | intergenic (‑552/‑229) | PP_5483/PP_1921 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (19/20); new base A (3/2); total (22/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-01 | |||||||||||
CCCTCGATCAGAAAGTTACTCTCAGCAACCTATTGCAGAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCGGGTGCAGATTCTGTCGAGCGAAGCAGGAGAGAGGAGGGTTGGTGTTATTTTGCTACTATGACTATGCGCACGACGGGCGG > NC_002947/2166560‑2166855 | cccTCGATCAGAAAGTTACTCTCAGCAACCTATTGCAGAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCt > 4:77165/1‑149 (MQ=255) cTCGATCAGAAAGTTACTCTCAGCAACCTATTGCAGAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTc > 7:29073/1‑149 (MQ=255) aTCAGAAAGTTACTCTCAGCAACCTATTGCAGAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAgg < 3:77165/149‑1 (MQ=255) cAGAAAGTTACTCTCAGCAACCTATTGCAGAGGGTATAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTCGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACA‑TGGCTTCCAGGtt > 5:284921/1‑149 (MQ=255) aaGTTACTCTCAGCAACCTATTGCAGAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGAAGCCAGGTTgatt < 1:304005/149‑4 (MQ=255) aGTTACTCTCAGCAACCTATTGCAGAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAgg < 8:29073/149‑1 (MQ=255) ttACTCTCAGCAACCTATTGCAGAGGGGTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACACGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTc < 2:271668/149‑1 (MQ=255) tctcAGCAACCTATTGCAGAGGGTATAAGGATCGCCGTTGGCCAATAAGTG‑AAACGACCCGCTCCTGGAGACGGATGATACGAGGGCTGATGGGCTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑ACTCTTCCACGTTGAAGGTCgtag > 4:230351/1‑149 (MQ=255) tctcAGCAACCTAGTGCAGAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCGGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCgtag > 6:152382/1‑149 (MQ=255) tcAGCAACCTATTGCTTAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AATCGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCgtag < 3:230351/147‑1 (MQ=255) tcAGCAACCTATTGCAGAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCgtagg > 7:305936/1‑148 (MQ=255) gCAACCTATTGCAGAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCgtagggag > 1:272208/1‑148 (MQ=255) aaCCTATTGCAGAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCgtagggagtag > 2:259/1‑149 (MQ=255) ccTATTGCAGAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCgtagggagtaggg > 5:172062/1‑149 (MQ=255) tATTGCAGAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCgtagggagtagggag > 4:277368/1‑149 (MQ=255) ttGCAGAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATACGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCgtagggagtagggag > 7:311656/1‑147 (MQ=255) cactaggTTTAACGCTAGCCCTTTGCCCATAAGTGCAAACAACCCGCCCCTGTCCCGGTAT‑AACCGCAGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCgtagggagtagggagtagg < 4:112809/143‑1 (MQ=255) cAGAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCgtagggagtagggagtagg < 3:70192/148‑1 (MQ=255) cAGAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAAGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCgtagggagaagggagtagg < 2:129221/148‑1 (MQ=255) agagGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCgtagggagtagggagtaggga < 2:150174/149‑1 (MQ=255) gagGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCAGCTCATGGAGCTGTATGATACGAGGTCTGTTGGTGTGTAGCTGGTTGAGTGAAGCTCAATAAACC‑TTGCTTCCAGGTTTCAGGTCgtatgtaggagggagtaggtag > 3:278676/1‑149 (MQ=255) gtgtcaGGAGCGCCGTTGGCAATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCgtagggagtagggagtagggagtagg < 8:305936/144‑1 (MQ=255) gATCGCCGGTGGCCAATATGTG‑AAACGCCCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGTGGTGTCGCTGGTGGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCGTAGGgagtagggagtagggagtagggagtagg < 4:295585/149‑1 (MQ=255) ttGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCgtagggagtagggagtagg < 8:207231/127‑1 (MQ=255) aTGTC‑AACCGACCCGCTCCTGTAGCTGGATGATCCGAGTGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGgc < 8:311656/148‑1 (MQ=255) tcccGCTCCAGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCggggg > 1:94388/2‑143 (MQ=255) ggAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCGGGTGCAGATTCTGTCGAg > 2:107077/1‑149 (MQ=255) gAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCATCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCGGGTGCAGATTCTGTCGa < 5:152382/147‑1 (MQ=255) gatgatCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCGGGTGCAGATTCTGTCGAGCGAAGCa < 2:272208/149‑1 (MQ=255) atgatCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCGGGTGCAGATTCTGTCGAGCGAAGCAg > 4:378743/1‑149 (MQ=255) atCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCGGGCGCAGATTCTGTCGAGCGAAGCAGga < 2:94388/148‑1 (MQ=255) tCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTGGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCGGGTGCAGATTCTGTCGAGCGAAGCAGgag < 6:172062/148‑1 (MQ=255) gAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTTGGGAGTAGGGGCAGGGAGAGTCGGCGCGGGTGCAGATTCTGTCGAGCGAAGCAGGagagag < 3:277368/149‑1 (MQ=255) gAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCGGGTGCAGATTCTGTCGAGCGAAGCAGGagagag > 2:345022/1‑149 (MQ=255) gtgtCGCTGGTTGAGTGAAGCTCAATCAACCATGGCTTCAAGGTTGCAGTTCTTAGGGAGTAGGGAGTAGGGAGTAGGTATTAGGGGAAGGGAGAGTCGGCGCGGGTGCAGATTATGTCGAGCGAAGAAGGAGAGAGGAGGGTTGgtgt > 1:238548/1‑149 (MQ=255) cTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGTGCAGGGAGAGTCGGCGCGGGTGCAGATTCTGTCGAGCGAAGCAGGAGAGAGGAGGGTTGGTGTTATTTTg > 8:144756/1‑149 (MQ=255) cTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCCCGCGTGGAGATTCTGTCGAGCGAAGCAGGAGAGAGGAGGGTTGGAGatatagg > 1:65306/1‑145 (MQ=255) tGGTTGAGGGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCGGGTGCAGATTCTGTCGAGCGAAGCAGGAGAGAGGAGGGTTGGTGTTATTTTGc < 2:238548/149‑1 (MQ=255) aaGCTCAATCAACC‑TGGCTTCATGGTTGAAGGTCGTTGGGAGTTGGTAGTAGGGAGTAGGTAGTCGGGGCTGGGAGAGTCGGCGCGGGTGATGATTCTGTCGAGCGAAGCAGGAGAGAGGAGGGTTGGTGTTATTTTGCTactatgac < 1:107077/148‑1 (MQ=255) caatcaaCC‑TGGCTTCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCGGGTGCAGATTCTGTCGAGCGAAGCAGGAGAGATGAGGGTTGGTGTTTTTTTGCTACTATGACTATgcg > 7:75403/1‑149 (MQ=255) ctgcaaCC‑TGGAAGCCAGGTTGCAGGTCGTACGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCGGGTGCAGATTCTGTCGAGCGCAGCAGGAGGGAGGAGGGGTGGTGGTATTTTGGTACTATGACTATgcga > 4:130479/4‑148 (MQ=255) tgcaaCC‑TGGACTCCAGGTTGCAGGTCGTAGGGAGTATGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCGTGTGCAGATTCTGTCGAGCGAAGCAGGAGAGAGGAGGGTTGGTGTTATTTTGCTACTATGACTATgc < 8:263962/144‑1 (MQ=255) tgcaaCC‑TGGAAGCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCGGGTGCAGATTCTGTCGAGCGAAGCAGGAGAGAGGAGGGTTGGTGTTATTTTGCTACTATGACTATGCGCa > 2:16532/3‑149 (MQ=255) tgcaaCC‑TGGAAGCCAGGTTGCAGGTCGTAGGGAGTAAGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCGGGTGCAGATTCTGTCGAGCGAAGCAGGAGAGAGGAGGGTTGGTGGTATTTTGCTACTATGACTATgc > 7:263962/3‑146 (MQ=255) gCTTCCCGGTTGCAGGTCGGAGGGAGACGGGCGGAGGGCTTAGGGAGTAGGAGCAGCGAGAGGCTGCGCGTGTGCAGATTCTGTCGAGCGACGCAGGAGAGAGGAGGGTTGGTGTTATTTTGCTACTATGACTATGCGCACGACGGGc < 4:278676/148‑1 (MQ=255) gCTTCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGTGTAGGTAGTAGGTGCAGGGAGAGTCGGCGCGGGTGCAGATTCTGTCGAGCGAAGCAGGAGAGAGGAGGGTTGGTGTTATTTTGCTACTATGACTATGCGCACGACggg < 7:144756/147‑1 (MQ=255) ttCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCGGGTGGAGATTCTGTCGAGCGAAGCAGGAGAGAGGAGGGTTGGTGTTATTTTGCTACTATGACTATGCGCACGACGGGCgg > 2:219376/1‑148 (MQ=255) | CCCTCGATCAGAAAGTTACTCTCAGCAACCTATTGCAGAGGGTTTAAGGATCGCCGTTGGCCATTATGTG‑AAACGACCCGCTCCTGGAGCGGGATGATCCGAGGGCTGTTGGGGTGTCGCTGGTTGAGTGAAGCTCAATCAACC‑TGGCTTCCAGGTTGCAGGTCGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGCAGGGAGAGTCGGCGCGGGTGCAGATTCTGTCGAGCGAAGCAGGAGAGAGGAGGGTTGGTGTTATTTTGCTACTATGACTATGCGCACGACGGGCGG > NC_002947/2166560‑2166855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |