Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,228,275 C→G 9.1% T143R (ACG→AGG) ‡ holB → DNA polymerase III subunit delta'

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,228,2750CG 9.1% 166.0 / 7.4 55T143R (ACG→AGG) ‡holBDNA polymerase III subunit delta'
Reads supporting (aligned to +/- strand):  ref base C (28/22);  new base G (2/3);  total (30/25)
Fisher's exact test for biased strand distribution p-value = 6.50e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.50e-01

TGGCCTTTGTGGTGCAGACCGCGCAGTTAGGCGGGCGCAAGGTGGTGTTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCATGGCTGGCTGGCGCGTTACCCGACTGCGACGAGGTCGAGCGCGATGAGCTGCTGACGCTG  >  NC_002947/2228131‑2228423
                                                                                                                                                 |                                                                                                                                                    
tggCCTTTGTGGGGAAGACCGCGCAGTTAGGCGGGCGCAAGTTGGTGTTTATCGAGCCTGTGTAGGCGATGAATGTCAACGCCTCAAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGTTGATACCGTGTTGTTGCTGGTGACGCAc                                                                                                                                                  <  8:840/149‑1 (MQ=255)
    cTTTGTGGTGCAGACCGCGCAGTTAGGCGGGCGCAAGGTGGTGTTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCAccagc                                                                                                                                              >  7:174015/1‑149 (MQ=255)
    cTTTGTGGTGCAGACCGCGCAGTTAGGCGGGCGCAAGGTGGTGTTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCAccagc                                                                                                                                              >  3:24664/1‑149 (MQ=255)
    cTTTGTGGTGCAGACCGCGCAGTTAGGCGGGCGCAAGGTGGTGTTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCAccagc                                                                                                                                              <  2:64325/149‑1 (MQ=255)
       tgtgGTGCAGACCGCGCAGTTAGGCGGGCGCAAGGTGGTGTTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGCGTCAccagcaa                                                                                                                                            <  5:164188/148‑3 (MQ=255)
       tgtgGTGCAGACCGCGCAGTTAGGCGGGCGCAAGGTGGTGTTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGCGTCAccagcaa                                                                                                                                            <  4:79705/148‑3 (MQ=255)
          ggtgCAGACCGCGCAGTTAGGCGGGCGCAAGGTGGTGTTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACcagcccagcc                                                                                                                                        >  4:307821/1‑149 (MQ=255)
            tgCAGACCGCGCAGTTAGGCGGGCGCAAGGTGGTGTTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGt                                                                                                                                      >  7:86903/1‑149 (MQ=255)
                  ccGCGCAGTTAGGCGGGCGCAAGGTGGTGTTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTg                                                                                                                                <  2:287937/149‑1 (MQ=255)
                      gcAGTTAGGCGGGCGCAAGGTGGTGTTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCcga                                                                                                                            <  7:136088/149‑1 (MQ=255)
                       cAGTTAGGCGGGCGCAAGGTGGTGTTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCAc                                                                                                                                                  >  4:164368/1‑126 (MQ=255)
                       cAGTTAGGCGGGCGCAAGGTGGTGTTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCAc                                                                                                                                                  <  3:164368/126‑1 (MQ=255)
                         gTTAGGCGGGCGCAAGGTGGTGTTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCcgacga                                                                                                                         >  4:210601/1‑149 (MQ=255)
                                         gtggtgTTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGc                                                                                                           >  3:214937/1‑147 (MQ=255)
                                            gtgtTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCcag                                                                                                        >  3:149154/1‑147 (MQ=255)
                                              gtTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAgg                                                                                                    >  8:226318/1‑149 (MQ=255)
                                                 gATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTg                                                                                                  <  8:86903/148‑1 (MQ=255)
                                                   tCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGCGTCAccagcaa                                                                                                                                            >  3:140469/1‑102 (MQ=255)
                                                   tCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGCGTCAccagcaa                                                                                                                                            <  4:140469/104‑3 (MQ=255)
                                                        ccGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTcc                                                                                          <  3:307821/149‑1 (MQ=255)
                                                        ccGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTcc                                                                                          >  7:152177/1‑149 (MQ=255)
                                                         cGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTcc                                                                                          <  5:105920/148‑1 (MQ=255)
                                                         cGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTcc                                                                                          >  6:105920/1‑148 (MQ=255)
                                                           gTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCcagcag                                                                                                     >  6:43580/1‑135 (MQ=255)
                                                           gTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCcagcag                                                                                                     <  5:43580/135‑1 (MQ=255)
                                                           gTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCa                                                                                       <  5:358719/149‑1 (MQ=255)
                                                              gAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGcc                                                                                    <  7:226318/149‑1 (MQ=255)
                                                               aGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGcc                                                                                    >  1:25137/1‑148 (MQ=255)
                                                                   gATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGc                                                                                                                               <  7:63827/101‑1 (MQ=255)
                                                                   gATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGc                                                                                                                               >  8:63827/1‑101 (MQ=255)
                                                                      gAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTg                                                                             <  2:79624/148‑1 (MQ=255)
                                                                       aaTGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTgg                                                                            <  1:179991/148‑1 (MQ=255)
                                                                          gTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGcc                                                                          >  2:256661/1‑147 (MQ=255)
                                                                           tCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCa                                                                        <  4:149154/148‑1 (MQ=255)
                                                                              aCGCCTCCAACGCCCTGCTCAAAAGCGCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCATGCCTGGctctggg                                                                     >  1:203487/1‑143 (MQ=255)
                                                                              aCGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGc                                                                    >  1:262413/1‑149 (MQ=255)
                                                                                  cTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAgg                                                                >  6:217559/1‑149 (MQ=255)
                                                                                  cTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAgg                                                                >  5:355638/1‑149 (MQ=255)
                                                                                     cAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCAt                                                             >  4:263567/1‑149 (MQ=255)
                                                                                           ccTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCATGCCTGGCTCTGGGCCAGACTgggctgc                                                       <  2:203487/149‑2 (MQ=255)
                                                                                            cTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCAtggctggc                                                      >  7:3980/1‑149 (MQ=255)
                                                                                                  aaaaGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTTCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGc                                                                           >  3:75496/1‑122 (MQ=255)
                                                                                                  aaaaGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTACCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGc                                                                           <  4:75496/122‑1 (MQ=255)
                                                                                                         cTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCATGGCTGGCTGGCGCGTTAcc                                          >  1:189290/1‑149 (MQ=255)
                                                                                                          ttGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCATGGCTGGCTGGCGCGTTAccc                                         >  7:176421/1‑149 (MQ=255)
                                                                                                                   cTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCATGGCTGGCTGGCGCGTTACCCGACTGcgac                                <  1:256661/149‑1 (MQ=255)
                                                                                                                         gTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCATGGCTGGCTGGCGCGTTACCCGACTGCGACGAGGTc                          <  3:263567/149‑1 (MQ=255)
                                                                                                                            aTACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCATGGCTGGCTGGCGCGTTACCCGACTGCGACGAGGTCGa                        <  8:174015/148‑1 (MQ=255)
                                                                                                                            aTACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCATGGCTGGCTGGCGCGTTACCCGACTGCGACGAGGTCGAg                       >  7:14768/1‑149 (MQ=255)
                                                                                                                              aCCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCATGGCTGGCTGGCGCGTTACCCGACTGCGACGAGGTCGAgcg                     >  2:379342/1‑149 (MQ=255)
                                                                                                                               ccGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCATGGCTGGCTGGCGCGTTACCCGACTGCGACGAGGTCGAgcgc                    <  2:25137/149‑1 (MQ=255)
                                                                                                                                       gggCTGGTGCGTCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCATGGCTGGCTGGCGCGTTACCCGACTGCGACGAGGTCGAGCGCGATGAgct            >  4:59144/3‑149 (MQ=255)
                                                                                                                                         gCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCATGGCTGGCTGGCGCGTTACCCGACTGCGACGAGGTCGAGCGCGATGAgctgc          >  3:61573/1‑149 (MQ=255)
                                                                                                                                          cTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCATGGCTGGCTGGCGCGTTACCCGACTGCGACGAGGTCGAGCGCGATGAgctgc          <  1:379342/148‑1 (MQ=255)
                                                                                                                                             gTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCATGGCTGGCTGGCGCGTTACCCGACTGCGACGAGGTCGAGCGCGATGAGCTGCTGAc      >  8:304913/1‑149 (MQ=255)
                                                                                                                                                 cGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCATGGCTGGCTGGCGCGTTACCCGACTGCGACGAGGTCGAGCGCGATGAGCTGCTGACGCTg  <  4:24664/149‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
TGGCCTTTGTGGTGCAGACCGCGCAGTTAGGCGGGCGCAAGGTGGTGTTGATCGAGCCGGTGGAGGCGATGAATGTCAACGCCTCCAACGCCCTGCTCAAAAGCCTTGAAGAACCTTCCGGTGATACCGTGTTGTTGCTGGTGACGCACCAGCCCAGCCGTCTGTTGCCGACGATCAAGAGCCGCTGCCAGCAGGTGGCCTGTCCGCAGCCCAGTCTGGCCCAGAGCCAGGCATGGCTGGCTGGCGCGTTACCCGACTGCGACGAGGTCGAGCGCGATGAGCTGCTGACGCTG  >  NC_002947/2228131‑2228423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: