Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,236,134 | G→T | 7.2% | G415G (GGG→GGT) | uvrB → | uvrABC excinuclease protein B |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,236,134 | 0 | G | T | 7.2% | 169.4 / 2.6 | 56 | G415G (GGG→GGT) | uvrB | uvrABC excinuclease protein B |
Reads supporting (aligned to +/- strand): ref base G (24/27); new base T (2/2); total (26/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.02e-01 |
TGCCTTCCGCGCTGGACAACCGGCCGATGCGTTTCGACGAGTGGGAGGATGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGACCACGTTGACCAAACGCATGGCCGAGGACCTCAGCGATTACCT > NC_002947/2235989‑2236280 | tGCCTTCCGCGCTGGACAACCGGCCGATGCGTTTCGACGAGTGGGAGGATGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTg > 3:165010/1‑149 (MQ=255) gCCTTCCGCGCTGGACAACCGGCCGATGCGTTTCGACGAGTGGGAGGATGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTg > 6:100261/1‑148 (MQ=255) gCCTTCCGCGCTGGACAACCGGCCGATGCGTTTCGACGAGTGGGAGGATGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTg < 5:100261/148‑1 (MQ=255) ccTTCCGCGCTGGACAACCGGCCGATGCGTTTCGACGAGTGGGAGGATGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTgg < 8:284279/148‑1 (MQ=255) ccTTCCGCGCTGGACAACCGGCCGATGCGTTTCGACGAGTGGGAGGATGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGt < 1:155065/149‑1 (MQ=255) cgcgCTGGACAACCGGCCGATGCGTTTCGACGAGTGGGAGGATGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCAGCCCGGTCgggc < 1:848/149‑4 (MQ=255) gACAACCGGCCGATGCGTTTCGACGAGTGGGAGGATGTCAGCCCGAAGACCATTTTTGTTTCTGCCACTCCGGGCCCCTACGAGGCTGATCA‑TGCCGGGCGCGTGGTGGAGCAAGTTGTGCGCCCGACCGGGCTGCTCGACCCGCAgg > 1:196643/1‑148 (MQ=255) aaCCGGCCGATGCGTTTCGACGAGTGGGAGGATGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTa > 2:32066/1‑147 (MQ=255) aCCGGCCGATGCGTTTCGACGAGTGGGAGGATGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTagag < 1:61397/149‑1 (MQ=255) ccGATGCGTTTCGACGAGTGGGAGGATGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTgcg < 3:226220/149‑1 (MQ=255) tttCGACGAGTGGGAGGATGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCAGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGGGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGgcgc < 8:269310/149‑1 (MQ=255) acgaGTGGGAGGATGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGAcc < 6:197468/149‑1 (MQ=255) cgcgTGGGAGGATGTCAGCGCGCAGACCCGTTTTGTTTAGGCCAGTCGGGGCGCCTACGAGGCTGAGCA‑TGCCGGGCGCGGGGTGGAGCAGGTGGTGCGCCCGACGGGGCTGGTCGCCGCGCAGGTGGAGGTGCGGCCGGGGGTGAgcc > 4:311536/4‑149 (MQ=255) aGTGGGAGGATGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAg > 3:164749/1‑149 (MQ=255) gTGGGAGGATGTCAGCGCGCAGAGCATTTTTGTTTCGGCCAGTCCGGGCCACTAGGAGGCTGAGCA‑TGCGGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTgg < 4:21792/110‑1 (MQ=255) gTGGGAGGATGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGAA‑TGCCGGGCGCTTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTgg > 3:21792/1‑110 (MQ=255) ggaggaTGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCAGAGCCGGGCGCGTGGTGGGGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTc > 1:310624/1‑149 (MQ=255) gaggaTGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAgg > 7:113124/1‑124 (MQ=255) gaggaTGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAgg < 8:113124/124‑1 (MQ=255) gaTGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTcgacga > 2:319898/1‑149 (MQ=255) gaTGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTcgacga > 3:27395/1‑149 (MQ=255) gcAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACctg < 6:320639/148‑1 (MQ=255) gCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGTCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGCCCCAGGTCGACGACCTGCTGTcc > 6:220201/1‑148 (MQ=255) gCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGTCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTcc > 6:215077/1‑148 (MQ=255) aCCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGAt < 3:94206/149‑1 (MQ=255) cATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGGGGTGGAGCAAGGGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATcc < 7:75425/149‑1 (MQ=255) ttttGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGc > 2:366557/1‑148 (MQ=255) tGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAg < 6:68253/148‑1 (MQ=255) ttCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTcgac < 5:29092/121‑1 (MQ=255) ttCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTcgac > 6:29092/1‑121 (MQ=255) cGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGCTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTc > 5:123900/1‑149 (MQ=255) aCTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCgg > 2:77708/1‑148 (MQ=255) tCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAg > 2:108282/1‑149 (MQ=255) ggCCCCTACGAGGCTGTGCA‑TGCCGGGCGCGTTGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGAGCCGGAGGTAGAGGTGCGCCGGGCGCTGACCCAGGTCGACTACCTGCTGTCCGAGATCCGCAAGCATGTCGCGGCAGgcta < 7:361176/149‑3 (MQ=255) ccTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGgcgagcga < 4:164749/149‑1 (MQ=255) cTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGcgagcgag > 3:381022/1‑149 (MQ=255) ggCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGgcga < 4:24066/138‑1 (MQ=255) ggCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGgcga > 3:24066/1‑138 (MQ=255) tGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGa > 8:288849/1‑149 (MQ=255) gggCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGACCACGTTGAc < 1:366557/149‑1 (MQ=255) gggCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGACCACGTTGAc < 7:288849/149‑1 (MQ=255) gtggAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGACCACGTTGACCAAACGCAt < 4:165010/149‑1 (MQ=255) gtggAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTCCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGCCCACGTTGACCAAACGCAt > 6:352674/1‑149 (MQ=255) tggAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGACCACGTTGACCAAACGCATg < 2:198865/149‑1 (MQ=255) gCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGgcgagc > 4:117767/1‑113 (MQ=255) gCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGgcgagc < 3:117767/113‑1 (MQ=255) gCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGACCACGTTGACCAAACGCATGGcc > 7:271959/1‑148 (MQ=255) cAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGACCACGTTGACCAAACGCATGGCCGa < 4:98991/149‑1 (MQ=255) aaGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGACCACGTTGACCAAACGCATGGCCGAg < 2:310624/149‑1 (MQ=255) tggtgCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGACCACGTTGACCAAACGCATGGCCGAGGAc < 4:27395/149‑1 (MQ=255) gcgcCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGACCACGTTGACCAAACGCATGGCCGAGGACCt > 4:271272/1‑147 (MQ=255) gcCCGACCGGTCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGACCACGTTGACCAAACGCATGGCCGAGGACCTCAGc < 5:215077/149‑1 (MQ=255) gcCCGACCGGTCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGACCACGTTGACCAAACGCATGGCCGAGGACCTCAGc < 5:220201/149‑1 (MQ=255) gcCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGACCACGTTGACCAAACGCATGGCCGAGGACCTCAGc > 1:140525/1‑149 (MQ=255) gACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGACCACGTTGACCAAACGCATGGCCGAGGACCTCAGCGAtt < 2:140525/149‑1 (MQ=255) ccGTGCTGGTCGACCCGCAGGTAGATGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTACGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGATGGCGACCACGTTGACCAAACGCATGGCCGAGTACCTCAGCTATTAc < 2:196643/149‑1 (MQ=255) gggCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGACCACGTTGACCAAACGCATGGCCGAGGACCTCAGCGATTAGCt < 1:77708/149‑1 (MQ=255) | TGCCTTCCGCGCTGGACAACCGGCCGATGCGTTTCGACGAGTGGGAGGATGTCAGCCCGCAGACCATTTTTGTTTCGGCCACTCCGGGCCCCTACGAGGCTGAGCA‑TGCCGGGCGCGTGGTGGAGCAAGTGGTGCGCCCGACCGGGCTGGTCGACCCGCAGGTAGAGGTGCGCCCGGCGCTGACCCAGGTCGACGACCTGCTGTCCGAGATCCGCAAGCGTGTCGCGGCAGGCGAGCGAGTGCTGGCGACCACGTTGACCAAACGCATGGCCGAGGACCTCAGCGATTACCT > NC_002947/2235989‑2236280 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |