| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,629 | A→G | 10.5% | T379A (ACC→GCC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,629 | 0 | A | G | 10.5% | 302.9 / 22.9 | 124 | T379A (ACC→GCC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (58/53); new base G (5/8); total (63/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
Only 100 of 128 total aligned reads displayed.
GCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCA > NC_002947/195483‑195777 | gTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑caccac < 6:348490/149‑1 (MQ=39) tttCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACcg > 6:156549/1‑149 (MQ=39) gaaTTACTTCTACACCAACGGTTCGACCGTCAGCGTCACCATCCAGAACGCCACAGTCGGTAATTTCCAGCAACTCAACCCGACTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGa < 8:359791/148‑1 (MQ=11) cAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGc > 7:337389/1‑147 (MQ=38) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGACACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAg < 4:306569/148‑1 (MQ=12) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGcc > 5:14482/1‑149 (MQ=37) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCg > 6:88732/1‑149 (MQ=17) tCTACACCTATGGTTCGAACTTGAGCGTCACCATCGAGAACGCCACGGGCGGTAATTTCGAGCAACTGACCCGGAATCCTACCCCGGCTCATAGCAGTATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCg < 4:293878/149‑1 (MQ=11) caacacCGGTTCCACCGTCAGCGTCACCCTCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGCCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCa < 1:369559/149‑1 (MQ=255) accaccGGTTCTACCGTCAGCGTTACCATCGACAACCCAACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGACCCCTCTCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc < 6:261143/144‑1 (MQ=11) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 2:36436/1‑149 (MQ=17) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 7:187467/1‑149 (MQ=17) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 5:2873/1‑149 (MQ=17) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAc < 6:2873/149‑1 (MQ=17) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 5:355089/1‑148 (MQ=17) cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGa < 2:175530/131‑1 (MQ=37) cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGa > 1:175530/1‑131 (MQ=37) cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg > 1:314458/1‑149 (MQ=17) ttCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg > 2:5095/1‑149 (MQ=37) ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg > 7:216440/1‑149 (MQ=17) gACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 7:307769/148‑1 (MQ=37) aCCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 8:337389/149‑1 (MQ=37) ccGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTg < 3:131870/149‑1 (MQ=38) gTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGc > 4:172975/1‑123 (MQ=38) gTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 6:14482/149‑1 (MQ=39) cAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa > 8:69239/1‑149 (MQ=39) aGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa > 2:268934/1‑148 (MQ=39) cGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACtt < 3:291058/149‑1 (MQ=39) cGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt > 7:19837/1‑148 (MQ=17) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 1:203852/149‑1 (MQ=17) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGCCCACGATCAACGACTCGGTCGA‑CACCACTCCCGCGACCCTGACGGCGAGCCAGTCGGTCACCGAAGGCGGCGTGATCACGTacacag > 8:144900/1‑147 (MQ=11) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 8:303227/148‑1 (MQ=17) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 2:81173/1‑149 (MQ=17) cATCGAGAACGCCACAGGCGGTAATTACGAGCAACTGCCACAAAGTAATACCACGGCTCAGAAGACGATCAAAGAGTCGGTCGATGAACA‑AAAAGAGACAATGACGGCGAGCCCGGCGGTCACCGAAGGCGGCGTGATGACTTaggccg > 8:53413/1‑144 (MQ=2) tCGAGAATGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCa < 7:81304/120‑1 (MQ=255) tCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 2:375753/1‑148 (MQ=39) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 4:358798/1‑148 (MQ=17) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa < 5:88732/148‑1 (MQ=17) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAc < 8:216440/149‑1 (MQ=17) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt > 4:170745/1‑149 (MQ=17) cGCCACCCGCGGTAATTTCGACCACCTGACCCCGACTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCCCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 2:174851/149‑1 (MQ=14) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:36436/149‑1 (MQ=17) gCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg > 1:156779/1‑149 (MQ=39) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg < 3:166309/149‑1 (MQ=17) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCt < 4:253780/146‑1 (MQ=12) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 1:154808/142‑1 (MQ=17) cggcggTAATTTCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 3:289485/149‑1 (MQ=255) cggcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 4:208243/149‑1 (MQ=39) aggcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 8:61779/148‑1 (MQ=11) aggcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 5:15282/148‑1 (MQ=11) ggcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGCCCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAccc > 6:82174/1‑149 (MQ=255) gcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCt < 4:324099/149‑1 (MQ=17) gcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCt > 3:202637/1‑149 (MQ=21) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGc > 5:329900/1‑149 (MQ=17) tAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGccc < 4:191829/149‑1 (MQ=21) aaTTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc > 5:222407/1‑147 (MQ=17) aaTTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCt > 4:375589/1‑144 (MQ=39) ttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt < 8:195670/125‑1 (MQ=17) ttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 7:195670/1‑125 (MQ=17) cGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCGCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACg < 4:223112/148‑1 (MQ=12) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCATAACCGCGACCCTGACGGCGAGACCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACg > 3:190740/1‑147 (MQ=11) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 7:101286/149‑1 (MQ=21) gCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCgg < 7:121062/149‑1 (MQ=21) aaCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCt < 3:49023/134‑1 (MQ=14) aaCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACAACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGACGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCt > 4:49023/1‑134 (MQ=255) tGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAcc > 5:193675/1‑149 (MQ=38) gACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 5:241434/128‑1 (MQ=40) gACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc > 6:241434/1‑128 (MQ=40) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGa < 8:74068/149‑1 (MQ=12) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCaa < 1:225826/123‑1 (MQ=17) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCaa > 2:225826/1‑123 (MQ=17) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 5:114978/1‑148 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGac < 3:210598/149‑2 (MQ=9) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 2:218238/149‑1 (MQ=255) tCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGt < 1:268934/149‑1 (MQ=255) cGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTc < 1:375753/148‑1 (MQ=255) gACCCCGGCTCAGCCCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACCGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTcc > 3:326954/1‑148 (MQ=255) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGAcc < 3:21644/136‑1 (MQ=2) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTcc > 4:11444/1‑148 (MQ=255) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTcc > 3:73911/1‑148 (MQ=255) aCCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCTGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCaa > 6:288445/1‑149 (MQ=255) cccGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg < 8:187467/149‑1 (MQ=38) cGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGc > 1:247553/1‑149 (MQ=39) ggCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGcc < 4:73911/149‑1 (MQ=39) cTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCa > 4:63456/1‑148 (MQ=39) tCAGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCaaa > 7:30859/1‑149 (MQ=37) aGACCACGATCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAAc > 2:103397/1‑148 (MQ=37) cACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa > 2:136006/1‑149 (MQ=39) tCAACGACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt > 8:249458/1‑149 (MQ=255) tCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt > 6:330131/1‑149 (MQ=39) gACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGc < 7:144900/149‑1 (MQ=255) gACTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGc > 5:263421/1‑149 (MQ=255) cTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 2:355050/149‑1 (MQ=255) cTCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 6:114978/149‑1 (MQ=255) tCGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCggg < 3:284556/149‑1 (MQ=255) tCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCggg > 7:214353/1‑149 (MQ=39) cGGTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGt < 8:30859/149‑1 (MQ=255) ggTCGA‑CACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGGACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGt > 6:107623/1‑148 (MQ=255) gA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa < 5:156549/148‑1 (MQ=39) a‑cacCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAcc < 6:46979/149‑1 (MQ=39) | GCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑CACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCA > NC_002947/195483‑195777 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |