| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,179 | A→G | 7.7% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,179 | 0 | A | G | 7.7% | 470.7 / 19.9 | 167 | V895V (GTA→GTG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (80/74); new base G (9/4); total (89/78) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 172 total aligned reads displayed.
CCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTAC > NC_002947/197031‑197317 | ccGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCTGTCGA‑TGCCACCACAGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTa < 7:360741/149‑1 (MQ=255) cGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTaa > 8:363942/1‑149 (MQ=38) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAt > 8:256641/1‑148 (MQ=255) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc > 4:19713/1‑149 (MQ=21) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCTAAGGCGGCGTAATCAc < 6:35873/149‑1 (MQ=255) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAc < 7:176808/149‑1 (MQ=255) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAcc > 3:242308/1‑149 (MQ=38) gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa > 8:308635/1‑149 (MQ=17) gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTa > 2:273304/1‑149 (MQ=37) gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTa < 6:362160/149‑1 (MQ=37) cACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGCC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGGAAGCACCTacc > 2:324973/1‑148 (MQ=255) cACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGCC‑CCAGACGGCGAACCCGTCGGTCACCCAACGCGGCGTGATCActaaca > 5:275525/1‑144 (MQ=11) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg < 1:100508/149‑1 (MQ=17) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAAGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGCCCGCGTAATCACCTacacag > 6:259705/1‑147 (MQ=255) cATCGAGAACGCCACAGGCGGTAATTTCGAGAAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAAAGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCAGTCGGTCACCGAAGGCGGCGTAATCACCTACACCg > 5:144732/1‑149 (MQ=255) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGt > 7:14741/1‑148 (MQ=37) gagaACGCCCCAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACGACGATCTACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGATCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGa < 2:98785/148‑1 (MQ=255) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAc > 4:210598/1‑149 (MQ=17) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCTTGa < 2:383250/148‑1 (MQ=37) gaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc‑cc > 1:263852/1‑149 (MQ=37) gaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc‑cc < 1:171159/149‑1 (MQ=37) gaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc‑cc < 5:238816/149‑1 (MQ=37) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCt > 7:6144/1‑148 (MQ=17) cGCCACTGGCGGTAATTTCGAGCAACTGACCCCTAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGa < 7:347340/149‑1 (MQ=21) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGa < 3:219477/149‑1 (MQ=37) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAg > 5:20698/1‑149 (MQ=17) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAg < 3:19713/149‑1 (MQ=17) aGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATc > 4:59154/1‑149 (MQ=35) ggCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATcc < 2:263852/149‑1 (MQ=34) gCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCt > 7:79203/1‑149 (MQ=34) gCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCTATCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCt < 1:300250/149‑1 (MQ=255) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGcc < 6:124468/149‑1 (MQ=34) gTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGcc > 2:253953/1‑149 (MQ=21) tttCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCAGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGa > 3:50441/1‑149 (MQ=21) tCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACTGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGAc < 7:154833/148‑1 (MQ=21) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGATGGAGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGcc > 7:26006/1‑149 (MQ=21) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGcc > 1:68258/1‑149 (MQ=34) gAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGcc > 6:65180/1‑149 (MQ=21) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCg < 3:315649/149‑1 (MQ=34) aGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCg < 7:356778/149‑1 (MQ=21) aaCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGtg < 3:84981/149‑2 (MQ=18) aCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTaa > 5:52238/1‑149 (MQ=35) cTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGtga > 5:94113/1‑146 (MQ=11) aCCCCCAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAAcc < 6:247253/147‑1 (MQ=38) ccccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGt > 5:349252/1‑148 (MQ=39) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa < 7:37287/149‑1 (MQ=39) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa < 7:127751/149‑1 (MQ=39) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa > 8:37287/1‑149 (MQ=39) ccGAATCCGACCCCGGCTCAGACCACGATCTACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAc > 1:34731/1‑149 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCt < 5:309542/126‑1 (MQ=35) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAcc > 4:23131/1‑149 (MQ=39) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATc < 3:169777/116‑1 (MQ=35) ggtCATACCACGTTCAACGACTCGGTGGA‑TGCCACCACCGCCTCAGCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGcc < 1:324973/147‑1 (MQ=11) cTCAGACCACGATCAACGACTCGGTCGAGTGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTaca > 1:23965/1‑91 (MQ=16) cTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTaca < 2:17717/90‑1 (MQ=33) cTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAg > 3:76653/1‑149 (MQ=35) acaCCACGATCAACGACTCGGTCGA‑TGCCACGATCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAgg < 3:278273/145‑1 (MQ=255) aGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGt > 1:167850/1‑148 (MQ=37) aCCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGa > 4:317267/1‑97 (MQ=33) aCCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcat > 1:108641/1‑149 (MQ=39) tCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCaa < 2:167693/94‑1 (MQ=33) tCAACGACTAGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCACGTCGGTCACCGAAGGCGGCTTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt < 3:114402/149‑1 (MQ=255) cAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGt > 6:137588/1‑147 (MQ=255) aaCGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGa < 8:14741/149‑1 (MQ=255) aCGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCCCCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTg > 6:378282/1‑147 (MQ=255) aCGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc < 4:21581/82‑1 (MQ=33) aCGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCATCGGCCAGGTCATCACTGTTGaa < 7:242282/149‑1 (MQ=255) gACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGc > 2:121246/1‑149 (MQ=255) cTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCg > 6:207673/1‑149 (MQ=255) cTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCg > 4:305917/1‑149 (MQ=255) tCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCgg > 3:335542/1‑149 (MQ=255) tCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGc < 8:198935/146‑1 (MQ=255) a‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACg < 1:140149/117‑1 (MQ=35) caccacCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGAGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAg < 4:245828/148‑1 (MQ=255) caccacCGCGAC‑CCTGACGGCGAGCCCGTCGGACACCGAAGGCGGCGTAATCACCTACACCGAGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTCTCCAACGTCGAGGTCATCACAGTAGAAGCCGCCAAAACCCAgg > 8:274923/1‑149 (MQ=14) accaccGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAggg < 8:51103/149‑1 (MQ=255) accaccGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAggg > 6:211231/1‑149 (MQ=255) caccGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAggg > 1:338604/1‑147 (MQ=255) ccGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGc > 6:286147/1‑149 (MQ=255) c‑ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGa < 4:76653/148‑1 (MQ=255) c‑ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAt > 3:257637/1‑149 (MQ=255) c‑ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAt < 4:26514/149‑1 (MQ=255) c‑ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAt > 2:256354/1‑149 (MQ=255) ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAtt > 8:123146/1‑149 (MQ=255) ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAtt > 2:228118/1‑149 (MQ=255) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAttt < 2:113587/149‑1 (MQ=255) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACGCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAttt > 1:295797/1‑149 (MQ=255) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc > 8:84060/1‑149 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCGGAGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCGGAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAATCCGGCAAAACCCAGGGCAGCGTCGATTTc < 2:52986/147‑1 (MQ=255) ggTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATg < 7:97017/149‑1 (MQ=255) ggTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATg < 3:23131/149‑1 (MQ=255) tCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc < 1:99853/149‑1 (MQ=40) tCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc > 4:169188/1‑149 (MQ=40) tCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc < 5:211231/149‑1 (MQ=40) aCCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGTCAGCGTCGATTTCCAGACCCCGGCCAATGACGt < 5:259705/149‑1 (MQ=255) aCCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACg < 2:34731/148‑1 (MQ=39) ccGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAcc > 7:43230/1‑68 (MQ=35) ccGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTc > 6:34354/1‑149 (MQ=39) aaGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTac < 6:89171/149‑1 (MQ=39) aGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTac > 5:134921/1‑148 (MQ=39) | CCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGA‑TGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTAC > NC_002947/197031‑197317 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |