Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,050,044 | A→T | 17.3% | intergenic (+16/‑125) | PP_2662 → / → PP_2663 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,050,044 | 0 | A | T | 17.3% | 59.4 / 9.8 | 35 | intergenic (+16/‑125) | PP_2662/PP_2663 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (10/19); new base T (4/2); total (14/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.91e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.40e-02 |
GTTCCATGACATCAACGACAACCTGAAACTGGTGGCCGAGTACAACCAGTTTTCCATCGACGGGCATGACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCGAATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTACCCAAGTAGCATTCGTCACCCACCACCACCTCCTTAAACTGATCACTCAGCCACCCCGTGCCGGAGACCACGATGCAGCAGGCTCATAACGAC > NC_002947/3049899‑3050189 | ggtCCATGACATCCACGACAACCTGAAACTGGTGGCCGAGTACAACCAGTTTTCCATCGACGGGCATGACAGCAGTGCGCACAACGAAGACACCGATACCT‑‑TTGCGTTGGGCGCGGTTTTGACCTGGTAAG‑CGGCCGGGGCCGCTAggc < 5:84191/147‑1 (MQ=255) gtCCATGACCTCAACGACACCCTGAACCTGGTGGCCGAGTACCACCAGTTTTCCATCGACGGGCAGGACACCAGGGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCGGGTAAG‑CGGCCGGGGCCGCTAgg < 7:230860/146‑1 (MQ=255) tGACATCAACGACAACCTGAAACTGGTGGCCGAGTACAACCAGTTTTCCATCGACGGGCATGACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCCTAGCGGcccc < 3:228856/149‑1 (MQ=255) cttCAACGACATCCTTAATCTGGTTGCGGAGTACTACCTGTTTTCCATCTACGGGCTTGACTCCAGTGCGCAGAACTAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCGaa < 2:295103/147‑1 (MQ=255) cATCAACGACAACCTGTAACTGGTGGCCGAGTACAACCAGTTTTCCATCGACGGGCATGACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCGa < 3:128293/148‑1 (MQ=255) cATCAACGACAACCTGAAACTGGTGGCCGAGTACAACCAGTTTTCCATCGACGGGCATGACACCAGTGCGCAGAACGAAGACACGGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCGaa < 8:319038/149‑1 (MQ=255) cATCAACGACAACCTGAAACTGGTGGCCGAGTACAACCAGTTTTCCATCGACGGGCATGACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGGCCCgga > 7:92089/1‑147 (MQ=255) aTCAACGACAACCTGAAACTGGTGGCCGAGTACAACCAGTTTTCCATCGACGGGCATGACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGGCGGGGCCGCCTAGCGGCCCCggcc < 1:113503/149‑4 (MQ=255) aCGACAACCTGAAACTGGTGGCCGAGTACAACCAGTTTTCCATCGACGGGCATGACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCGAATGaca < 6:41888/149‑1 (MQ=255) ccTGAAACTGGTGGCCGAGTACAACCAGTTTTCCATCGACGGGCATGACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTa > 4:85984/1‑125 (MQ=255) ccTGAAACTGGTGGCCGAGTACAACCAGTTTTCCATCGACGGGCATGACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGCGGCCGCTa < 3:85984/125‑1 (MQ=255) ctcggccaCCAGTTTTCCATCGACGGGCATGACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAGCCGGCCGGGGCCGCTAGGCGGCCCCGAATGACA‑CGGTCTTTTACGCCCATGGaa < 1:295990/141‑1 (MQ=255) aGTACAACCAGTTTTCCATCGACGGGCATGACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGGCGCGAGGGGGGGCCGCATTCCA‑CGGGCGGTTAGGGCCATGGGAccc > 4:233278/1‑148 (MQ=255) aaCCAGTTTTCCATCGACGGGCATGACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGGCGCTAGGCGGGCCCGACTGACA‑CGGGCTTTTACGCCCAATGAAcccccccc > 2:61896/1‑147 (MQ=255) ccAGTTTTCCATCGACGGGCATGACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCCAATGACA‑CGGTCTTTTACGCCCAAGGAAACGCCCAccc > 6:188076/1‑149 (MQ=255) tttCCATCGACGGGCATGACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCGAATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTa < 7:244853/148‑1 (MQ=255) ttCCATCGACGGGCATGACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTATGCGGCCCCCCCATACA‑CCGTGGTTTAAGGCCCAGGGACCGCCCAcccccgaac > 3:377618/1‑143 (MQ=255) gggCATGACACCAGTGCGCAGAACGAAGACAACGATACCTTCTTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCGAATGACA‑Cg < 1:310875/106‑1 (MQ=255) gACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCGAATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTACCCAAGTAGCATTCGTca > 3:114905/1‑149 (MQ=255) gACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCAAGGCGGGCCCCAAAGAAA‑CCGTCTTTTTAGCCCATGGAACCGCCCACCCCCTAACCAAATATCATTAGTca > 7:229382/1‑149 (MQ=255) cAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGGCGCGAGGCGGCCCCCCAAGACACCGGGGTTTTA‑GCCCCAGGCACCCCCCCCCCCCGACCCAACTAGGCTTAGTaaccccc > 3:193997/1‑147 (MQ=255) gAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCGAATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTACCCAAGTAGCATTCGTCACCCACCACCAcctc < 4:114905/149‑1 (MQ=255) aaCGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCGAATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTACCCAAGTAGCATTCGTCACCCACCACCAcctcc < 3:381763/149‑1 (MQ=255) acCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCGAATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTACCCAAGTAGCATTCGTCACCCACCACCACCTCCTTAAACTGa > 1:52313/1‑149 (MQ=255) ccGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCGAATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTACCCAAGTAGCATTCGTCACCCACCACCACCTCCTTAAACTGAt < 2:52313/149‑1 (MQ=255) cGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCGCCTGCCA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCGACCCAAGTAGCATTCGTCACCCACCACCCCCTCCTTAAAcggct > 7:80705/1‑144 (MQ=255) cGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCGAATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTa < 3:351877/105‑1 (MQ=255) ggCGCGGTGTTGACCTGTTAAG‑CGGCCGGGGCCGCTAGTCGGCCCCGAATGACA‑CGTTCTTTTACGCGCATGTAACCGCCCACCCGCTACCCAAGTAGCATTCGTCACCCAACACCACCTCCTTAAACTGATCACTCAGCGACCCCGTg < 4:377618/149‑1 (MQ=255) gcgcGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCGAATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTACCCAAGTAGCATTCGTCACCCACCACCACCTCCTTAAACTGATCACTCAGCCACCCCGTGc < 2:337294/149‑1 (MQ=255) gtgtTGACCTGGTAAT‑CGGGCGGGGCCGCTAGGCGGCCCCGAATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTACCCAAGTAGCATTCGTCACCCACCACCACCTCCTTAAACTGATCACTCAGCCACCCCGTGCCGgag < 3:229309/149‑1 (MQ=255) cGGCCGGGGCCGCTAGGCGGCCCCGGATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTACCCAAGTAGCATTCGTCACCCACCACCACCTCCTTAAACTGATCACTCAGCCACCCCGTGCCGGAGACCACGATGCAGCAgg < 8:92089/149‑1 (MQ=255) attcGGGGCCGCCTAGCGGCCCCGGATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTACCCAAGTAGCATTCGTCACCCACCACCACCTCCTTAAACTGATCACTCAGCCACCCCGTGCCGGAGACCACGATGCAGCAGGc > 7:238036/4‑149 (MQ=255) ggggCCGCCTAGCGGCCCCGAATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTACCCAAGTAGCATTCGTCACCCACCACCACCTCCTTAAACTGATCACTCAGCCACCCCGTGCCGGAGACCACGATGCAGCAGGCTCa > 3:179072/1‑148 (MQ=255) ggggCCGCCTAGCGGCCCCGAATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTACCCAAGTAGCATTCGTCACCCACCACCACCTCCTTAAACTGATCACTCAGCCACCCCGTGCCGGAGACCACGATGCAGCAGGCTCa > 3:178670/1‑148 (MQ=255) ggggCCGCCTAGCGGCCCCGAATGACA‑CGGTCTTTTACGCCAATGGACCCGCCCACCCGCTACCCAAGTAGCATTCGTCAACCACAAGACCCTCAGGGAAAGGATCCCTCAGCCACCCCGAGCCGGCGACGACGAAGCAGCAGGCGCAt > 6:238302/1‑149 (MQ=255) gCTAGGCGGCCCCGAATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTACCCAAGTAGCATTCGTCACCCACCACCACCTCCTTAAACTGATCACTCAGCCACCCCGTGCCGGAGACCACGATGCAGCAGGCTCATAacgac < 1:61896/149‑1 (MQ=255) gCTAGGCGGCCCCGAATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTACCCAAGTAGCATTCGTCACCCACCACCACCTCCTTAAACTGATCACTCAGCCACCCCGTGCCGGAGACCACGATGCAGCAGGCTCATAacgac < 8:80705/149‑1 (MQ=255) | GTTCCATGACATCAACGACAACCTGAAACTGGTGGCCGAGTACAACCAGTTTTCCATCGACGGGCATGACACCAGTGCGCAGAACGAAGACACCGATACCT‑‑TTGCGGTGGGCGCGGTGTTGACCTGGTAAG‑CGGCCGGGGCCGCTAGGCGGCCCCGAATGACA‑CGGTCTTTTACGCCCATGGAACCGCCCACCCGCTACCCAAGTAGCATTCGTCACCCACCACCACCTCCTTAAACTGATCACTCAGCCACCCCGTGCCGGAGACCACGATGCAGCAGGCTCATAACGAC > NC_002947/3049899‑3050189 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |