Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,430,686 | A→G | 6.9% | K302E (AAG→GAG) | PP_3045 → | ATP‑dependent protease ClpP |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,430,686 | 0 | A | G | 6.9% | 166.4 / 2.3 | 58 | K302E (AAG→GAG) | PP_3045 | ATP‑dependent protease ClpP |
Reads supporting (aligned to +/- strand): ref base A (28/26); new base G (2/2); total (30/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.82e-01 |
GCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTGGTCGGTGGCGGCAAGGGATTCGAGATCGAC > NC_002947/3430539‑3430826 | gctccGAATTCAAAAGACTCAGCAGCCTTGGCCTTTAAGATCACCCACGCATGCATCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAATCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCaa < 3:41102/146‑1 (MQ=255) gAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCgg < 2:208388/149‑1 (MQ=255) aaTGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCgg > 3:112663/1‑148 (MQ=255) cTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACctct > 7:202307/1‑149 (MQ=255) tCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTg > 8:11250/1‑149 (MQ=255) tCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTg > 8:135931/1‑149 (MQ=255) tCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTg > 3:28689/1‑149 (MQ=255) agcagcCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCg > 6:341628/1‑149 (MQ=255) cagcCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGtt < 3:332270/149‑1 (MQ=255) agcCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTg < 8:202307/149‑1 (MQ=255) gccttggccttgTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGc < 7:161771/149‑1 (MQ=255) ccttggccttgTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCa < 4:69932/149‑1 (MQ=255) ggccttgTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGccc > 6:349083/1‑149 (MQ=255) ttgttgATCACCCAGGCCCGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCtt > 5:303493/1‑149 (MQ=255) gttgATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGc > 1:181996/1‑149 (MQ=255) tCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGccc > 6:38620/1‑146 (MQ=255) cACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGccc > 2:142697/1‑145 (MQ=255) ccAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAATCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCGAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCACGAGATGa > 3:212350/1‑149 (MQ=255) ccAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCGAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGa > 3:207340/1‑149 (MQ=255) ccAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGa > 8:26122/1‑149 (MQ=255) aaGGCGGTGATCAGCAACCTGGTGGAGCCTATGATTGCATCGACCAAGATTGCGTATGTAGCCACCGTGCAGGCAGCACTGACCCGCTCCGAGTCGGTACTGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGt < 4:212350/149‑1 (MQ=255) aaGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCGAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGt < 4:207340/149‑1 (MQ=255) aGGCGGGGATAAGCAACCTGCTTGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCCGTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTc < 4:61356/149‑1 (MQ=255) gCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTc > 1:75326/1‑147 (MQ=255) gCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCa < 7:11250/149‑1 (MQ=255) aTCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAggccgg > 7:299051/1‑149 (MQ=255) tCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAggccggc > 6:200057/1‑149 (MQ=255) gCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGAGCGCTGAGTTCGTCCAGGCCGGCGTg > 2:385324/1‑149 (MQ=255) cAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAggccggc > 2:370473/1‑145 (MQ=255) cAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAggccggc < 1:370473/145‑1 (MQ=255) cAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAg > 5:273462/1‑139 (MQ=255) cAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAg < 6:273462/139‑1 (MQ=255) cAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTg > 3:193238/1‑148 (MQ=255) gtggAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGacgaact < 4:28689/149‑7 (MQ=255) gAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACgg < 5:349083/148‑1 (MQ=255) aGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGcc < 7:135931/149‑1 (MQ=255) cATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCgg > 8:274656/1‑149 (MQ=255) cATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCgg < 7:35640/149‑1 (MQ=255) tCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGgtt < 7:26122/149‑1 (MQ=255) aCCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGgttgtt < 6:153614/149‑1 (MQ=255) aCCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGgttgtt < 5:200057/149‑1 (MQ=255) ccAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTc < 2:75326/149‑1 (MQ=255) ccAAGCTTGCTGATGAAGCCACCGTCCACGCAGCACTGACCCGCGCCAAGGCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTc < 8:139079/149‑1 (MQ=255) tgatgaAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTgg > 8:245110/1‑149 (MQ=255) atgaAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTGGTc > 1:145917/1‑149 (MQ=255) aaGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTGGTCGGt < 4:112663/149‑1 (MQ=255) aGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTGGTCGGTg < 7:274656/149‑1 (MQ=255) gCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTGGTCGGTgg < 4:193238/149‑1 (MQ=255) cACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTGGTCGGTggcg < 5:38620/149‑1 (MQ=255) aCCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTGGTCGGTggcgg > 4:168870/1‑149 (MQ=255) cGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTGGTCGGTggcggc > 3:167040/1‑148 (MQ=255) aggcagCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTgg > 4:367452/1‑132 (MQ=255) aggcagCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTgg < 3:367452/132‑1 (MQ=255) agcaCTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTGGTCGGTGGCGGCAAGGGATTCg < 1:142697/149‑1 (MQ=255) tGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTGGTCGGTGGCGGCAAGGGATTCgaga > 7:302021/1‑147 (MQ=255) tGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTGGTCGGTGGCGGCAAGGGATTCgaga < 8:302021/147‑1 (MQ=255) ccccTCGACAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTGGTCGGTGGCGGCAAGGGATTCGAGATc < 8:299051/146‑1 (MQ=255) aCCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTGGTCGGTGGCGGCAAGGGATTCGAGATCGa > 7:265456/1‑149 (MQ=255) ccGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGACCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTGGTCGGTGGCGGCAAGGGATTCGAGATCGac > 7:138094/1‑148 (MQ=255) | GCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCCGAGATGACCGCTGAGTTCGTCCAGGCCGGCCTGGATGCAACGGCCGTACGTGCGCGGTTGTTCGACAAATTGGTCGGTGGCGGCAAGGGATTCGAGATCGAC > NC_002947/3430539‑3430826 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |