Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,470,866 T→G 8.5% I556L (ATC→CTC) ‡ PP_3084 ← ferric siderophore receptor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,470,8660TG 8.5% 175.6 / 5.0 57I556L (ATC→CTC) ‡PP_3084ferric siderophore receptor
Reads supporting (aligned to +/- strand):  ref base T (29/23);  new base G (3/2);  total (32/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCCCCTGGGCCAGGCCCTCGATGCGGTTGGCATAGAACGACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTGCAAATCGCTGCCGAAATAGGTATCGGTCGGGCGCGG  >  NC_002947/3470719‑3471013
                                                                                                                                                    |                                                                                                                                                   
gCCCCTGGGCCAGGCCCTCGATGCGGGTGGCATAGAACGACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATc                                                                                                                                                    <  8:77318/149‑1 (MQ=255)
  cccTGGGCCAGGCCCTCGATGCGGTTGGCATAGAACGACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGa                                                                                                                                                  <  7:214278/149‑1 (MQ=255)
    cTGGGCCAGGCCCTCGATGCGGTTGGCATAGAACGACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGAGCGACt                                                                                                                                                >  1:194033/1‑149 (MQ=255)
     tGGGCCAGGCCCTCGATGCGGTTGGCATAGAACGACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTg                                                                                                                                               >  8:96739/1‑149 (MQ=255)
         ccAGGCCCTCGATGCGGTTGTCATAGAACGACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGATCAGCGTCGACAGCTGGGCGACTGccac                                                                                                                                           <  6:261769/149‑3 (MQ=38)
                        ggTTGGCATAGAACGACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTc                                                                                                                            <  4:49102/149‑1 (MQ=255)
                         gTTGGCATAGAACGACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTc                                                                                                                            >  1:133155/1‑148 (MQ=255)
                          ttGGCATAGAACGACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCaa                                                                                                                          <  2:211147/149‑1 (MQ=255)
                            ggCATAGAACGACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAAc                                                                                                                         <  6:58006/148‑1 (MQ=255)
                             gCATAGAACGACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACa                                                                                                                        <  3:187306/148‑1 (MQ=255)
                                   aaCGACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGATCAGCGTCGACAGCTGGGCGACTGc                                                                                                                                              >  7:190927/1‑120 (MQ=38)
                                   aaCGACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGATCAGCGTCGACAGCTGGGCGACTGc                                                                                                                                              <  8:190927/120‑1 (MQ=38)
                                    aCGACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCgg                                                                                                                >  1:378307/1‑149 (MQ=255)
                                      gACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGcc                                                                                                                                             <  4:350411/118‑1 (MQ=255)
                                      gACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGcc                                                                                                                                             >  3:350411/1‑118 (MQ=255)
                                           aTGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCca                                                                                                         <  7:96739/149‑1 (MQ=255)
                                               tCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCcagcag                                                                                                     >  4:205176/1‑149 (MQ=255)
                                                cccAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCagcagc                                                                                                    <  6:48933/149‑1 (MQ=255)
                                                         tGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGgtg                                                                                           >  1:176691/1‑149 (MQ=255)
                                                           aTCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGAGCGTc                                                                                         >  2:145073/1‑149 (MQ=255)
                                                               ccAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGAGTCGGa                                                                                      >  4:40017/1‑148 (MQ=255)
                                                                    ccATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAAcgc                                                                                <  2:133155/149‑1 (MQ=255)
                                                                      aTACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGa                                                                              <  2:176691/149‑1 (MQ=255)
                                                                          acCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGct                                                                          >  8:255883/1‑149 (MQ=255)
                                                                              gggTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCttg                                                                      >  5:141120/1‑149 (MQ=255)
                                                                                   gtgATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCg                                                                                        <  6:94178/126‑1 (MQ=255)
                                                                                     gATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCg                                                                 <  7:81442/147‑1 (MQ=255)
                                                                                     gATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCg                                                                 >  8:81442/1‑147 (MQ=255)
                                                                                     gATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGt                                                               >  7:21509/1‑149 (MQ=255)
                                                                                     gATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGt                                                               >  4:247435/1‑149 (MQ=255)
                                                                                          aCTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTg                                                          >  8:338303/1‑149 (MQ=255)
                                                                                           cTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGc                                                         <  3:247435/149‑1 (MQ=255)
                                                                                                 gTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGCCGCTCTTGTTGCGGTTCTTGCcgacga                                                   >  1:141706/1‑149 (MQ=255)
                                                                                                  tAAGGCGTGTTGCGCACACGTGTGGCAGTCGCCCAGCTGTCGACGCGGATCGACTGCCGGGGCACTCCCAATGTCAACAGAACGCGGTCATCAAGCAGCCGCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGAt                                                  <  8:355027/149‑1 (MQ=255)
                                                                                                        gtgtTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCgg                                            >  1:335827/1‑149 (MQ=255)
                                                                                                             gcgcACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAAcgc                                                                                >  7:162028/1‑108 (MQ=255)
                                                                                                             gcgcACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAAcgc                                                                                <  8:162028/108‑1 (MQ=255)
                                                                                                             gcgcACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGt                                       >  1:55129/1‑149 (MQ=255)
                                                                                                              cgcACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTg                                      >  5:60434/1‑149 (MQ=255)
                                                                                                              cgcACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGAACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTg                                      >  1:289964/1‑149 (MQ=255)
                                                                                                               gcACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTg                                      >  8:68303/1‑148 (MQ=255)
                                                                                                                 acacCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTGCa                                    >  7:305162/1‑148 (MQ=255)
                                                                                                                     cTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGCCTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTGCAAATCg                               >  7:23709/1‑149 (MQ=255)
                                                                                                                     cTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTGCAAATCg                               >  7:246987/1‑149 (MQ=255)
                                                                                                                       gtgGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCGAGCAGCCCGAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTATTGCCGACGATGCGCCGGTCGTGCAAATCGCt                             >  6:89035/1‑149 (MQ=255)
                                                                                                                        tgGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTGCAAATCGCt                             <  3:205176/148‑1 (MQ=255)
                                                                                                                        tgGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGAGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTGCAAATCGCt                             <  3:40017/148‑1 (MQ=255)
                                                                                                                          gCAGTCGATCAGCGTCGACAGCTGGGCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTGCAAATCGCTGcc                          >  4:336086/1‑149 (MQ=255)
                                                                                                                             gTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTGCAAATCGCTGCCGa                        >  5:367708/1‑148 (MQ=255)
                                                                                                                              tCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTGCAAATCGCTGCCGaaa                      <  7:338303/149‑1 (MQ=255)
                                                                                                                               cGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTGCAAATCGCTGCCGAAAt                     <  8:246987/149‑1 (MQ=255)
                                                                                                                                 cccAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTGCAAATCGCTGCCGAAATAg                   >  5:256534/1‑149 (MQ=255)
                                                                                                                                  ccAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTGCAAATCGCTGCCGAAATAgg                  >  4:177972/1‑149 (MQ=255)
                                                                                                                                    aGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCTCGCGGTCATCCAGCAGCCCCATGGTGTCGGACAACGCGACGCTCTTGTTGCTGTTCTTGCCGACGATGCGCGGGTCGTGCAAATCGCTGCCGAAATAGGTa                <  5:44448/149‑1 (MQ=255)
                                                                                                                                    aGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTGCAAATCGCTGCCGAAATAGGTa                >  3:380693/1‑149 (MQ=255)
                                                                                                                                    aGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTGCAAATCGCTGCCGAAATAGGTa                <  2:7364/149‑1 (MQ=255)
                                                                                                                                                   aTCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTGCAAATCGCTGCCGAAATAGGTATCGGTCGGGCGCgg  <  2:335827/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
GCCCCTGGGCCAGGCCCTCGATGCGGTTGGCATAGAACGACACATGCTCCCAGGGTTTGATCACCAGGCCATACACCGGGGTTGTGATCGACTCATCGTAAGGCGTGTTGCGCACACCTGTGGCAGTCGCCCAGCTGTCGACGCTGATCGACTGCCGGCGCACGCCCACGGTCAACAGCACGCGGTCATCCAGCAGCCCCAGGGTGTCGGACAACGCGACGCTCTTGTTGCGGTTCTTGCCGACGATGCGCGGGTCGTGCAAATCGCTGCCGAAATAGGTATCGGTCGGGCGCGG  >  NC_002947/3470719‑3471013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: