Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,576,362 | T→A | 7.1% | D43V (GAC→GTC) | PP_3156 ← | universal stress protein family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,576,362 | 0 | T | A | 7.1% | 161.7 / 2.6 | 56 | D43V (GAC→GTC) | PP_3156 | universal stress protein family protein |
Reads supporting (aligned to +/- strand): ref base T (26/26); new base A (2/2); total (28/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.00e-01 |
GCGGGTCGCGGGTCAACAACAGCTCGGTGGATACGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAGCATGACGAACAGACGTTTGAACTGGCTCATCGCACACCTCCACGTGTGGC > NC_002947/3576216‑3576509 | gcgggtcgcgggtcAACAACAGCTCGGTGGATACGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGAcgtcg < 4:92104/149‑1 (MQ=255) tcgcgggtcAACAACAGCTCGGTGGATACGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTcgac < 1:230750/149‑1 (MQ=255) tcgcgggtcAACAACAGCTCGGTGGATACGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTcgac < 3:102027/149‑1 (MQ=255) tcgcgggtcAACAACAGCTCGGTGGATACGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGACGTcgac < 8:246154/149‑1 (MQ=255) cgggtcAACAACAGCTCGGTGGATACGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGaa < 7:36955/149‑1 (MQ=255) cgggtcAACAACAGCTCGGTGGATACGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGaa < 2:44928/149‑1 (MQ=255) gggtcAACAACAGCTCGGTGGATACGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCATGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAac < 8:140686/149‑1 (MQ=255) ggtcAACAACAGCTCGGTGGATACGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCTCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAaca < 6:160727/149‑1 (MQ=255) tcAACAACAGCTCGGTGGATACGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGACGTcgacaccttt < 6:273601/148‑7 (MQ=255) tcAACAACAGCTCGGTGGATACGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGACGTcgacaccttt > 5:273601/1‑142 (MQ=255) aacaacAGCTCGGTGGATACGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACAt < 3:302988/148‑1 (MQ=255) cTCGGTGGATACGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATc > 6:385920/1‑147 (MQ=255) cGGTGGATACGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCcag > 7:232946/1‑148 (MQ=255) gTGGATACGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCcagcag < 4:34760/149‑1 (MQ=255) aCGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCAcc > 2:105336/1‑149 (MQ=255) ccACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTg > 6:376220/1‑149 (MQ=255) acacCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGa > 6:12910/1‑149 (MQ=255) acCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGAct < 8:82921/149‑1 (MQ=255) gCATCGCTGAGCTGTTCGGCCTGTTCCGGCTGCCATTGCCGGTTGTCGCTGAGCAGCAGTTCACGCTCACTACCATCGCTCATCAAGCCAAATGTGTCGACGTCGTCGACGAACACATTGTTATCCAGCAGGGCTCCGCTGGACTCTGc < 4:275416/149‑1 (MQ=255) gCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAAc < 7:136517/148‑1 (MQ=255) cTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAAcgc > 1:196092/1‑149 (MQ=255) tCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAAcgcc > 7:199550/1‑149 (MQ=255) aGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGAcgtc > 4:337740/1‑95 (MQ=255) aGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGAcgtc < 3:337740/95‑1 (MQ=255) tCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCcgcgc < 3:9251/148‑1 (MQ=255) cGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGt > 5:316319/1‑149 (MQ=255) ggCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAAcgccgcctgcgctg > 5:116560/1‑142 (MQ=255) ggCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGtt > 4:277925/1‑149 (MQ=255) ccTCATCCGCCAGCCATTGGCGGTTGTCTCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTg > 2:35814/1‑148 (MQ=255) ccTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGCCTCTGCCAACGACGCCGCGCGTTGc > 6:100818/1‑149 (MQ=255) ccTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTg > 2:284285/1‑148 (MQ=255) ccTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGc < 3:81787/149‑1 (MQ=255) ccagccaTTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGc < 2:196092/149‑1 (MQ=255) ccagccaTTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGc < 6:316319/149‑1 (MQ=255) ccaTTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTAt < 8:232946/149‑1 (MQ=255) aTTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGa < 5:376220/149‑1 (MQ=255) ggTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGAGTATGACGCAtt > 4:239504/1‑149 (MQ=255) gTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCAttt < 3:277925/149‑1 (MQ=255) tGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGcc > 4:255319/1‑148 (MQ=255) agcagcCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAg > 4:113342/1‑149 (MQ=255) agcCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAGCAt < 1:105336/149‑1 (MQ=255) gcCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTAGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGACGAGc > 5:75202/1‑146 (MQ=255) gcCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGAAGTCGTAGACGAACACATTGATATGCAGAAGGGCACCGCTGGACTCTGCCAACGACGACGCGCGTTGCAGCTCAGGCGTATGACGCATTTGCGGTCCGAGCag > 6:92818/1‑147 (MQ=255) ccGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAGCATGa < 8:199550/149‑1 (MQ=255) gCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAGCATGACGAACAGa > 5:311079/1‑149 (MQ=255) tCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAGCATGACGAACAGACg > 8:47339/1‑149 (MQ=255) cGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAGCATGACGAACAGACGttt < 5:385920/149‑1 (MQ=255) gACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAGCATGACGAACAGACGTTTg < 3:239504/149‑1 (MQ=255) aCCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAGCATGACGAACAGACGTTTg > 1:157164/1‑148 (MQ=255) cTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCgg > 2:19067/1‑116 (MQ=255) atcaAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGAc > 3:260450/1‑63 (MQ=255) atcaAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGAc < 4:260450/63‑1 (MQ=255) atcaAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAGCATGACGAACAGACGTTTGAACTGGCTc < 1:284285/147‑1 (MQ=255) atcaAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAGCATGACGAACAGACGTTTGAACTGGCTCAt > 7:97611/1‑149 (MQ=255) tcaAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAGCATGACGAACAGACGTTTGAACTGGCTCATc < 2:131436/149‑1 (MQ=255) ccAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAGCATGACGAACAGACGTTTGAACTGGCTCATCGcaca > 3:221219/1‑149 (MQ=255) ttcgtCGACGACGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGAATCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACCCATTTGCGGGCCGAGCATGACGAACAGACGTTTGAACTGGCTCATCGAACCCCTc > 7:127621/4‑148 (MQ=255) tCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAGCATGACGAACAGACGTTTGAACTGGCTCATCGCACACCTCCACgt < 3:113342/149‑1 (MQ=255) aCGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAGCATGACGAACAGACGTTTGAACTGGCTCATCGCACACCTCCACGtgtg > 1:2862/1‑149 (MQ=255) gtcgtcGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAGCATGACGAACAGACGTTTGAACTGGCTCATCGCACACCTCCACGTGTGGc < 1:35814/149‑1 (MQ=255) | GCGGGTCGCGGGTCAACAACAGCTCGGTGGATACGTCCACACCGGCATCGCTCAGCTGTTCGGCCTCATCCGCCAGCCATTGGCGGTTGTCGCTGAGCAGCCGTTCACGCTCACGACCATCGCTCATCAAGCCAAAGGTGTCGACGTCGTCGACGAACACATTGATATCCAGCAGGGCACCGCTGGACTCTGCCAACGCCGCCGCGCGTTGCAGCGCAGGCGTATGACGCATTTGCGGGCCGAGCATGACGAACAGACGTTTGAACTGGCTCATCGCACACCTCCACGTGTGGC > NC_002947/3576216‑3576509 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |