Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,936,285 | C→G | 8.3% | A24G (GCC→GGC) | PP_3469 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,936,285 | 0 | C | G | 8.3% | 176.1 / 6.1 | 60 | A24G (GCC→GGC) | PP_3469 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (25/29); new base G (2/3); total (27/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.57e-01 |
GAGTCAACTGTCAAATCTATCAGTCGCCCAAGAGATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCACCCATAACCCGCAGTACGGAAAACACCTCCTTACCGCAGGCTTA > NC_002947/3936138‑3936432 | gagTCAACTGTCAAATCTATCAGTCGCCCAAGAGATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGcc < 6:144787/149‑1 (MQ=255) gTCAAATCTATCAGTCGCCCAAGAGATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACg > 4:67413/1‑149 (MQ=255) gTCAAATCTATCAGTCGCCCAAGAGATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACg > 4:359776/1‑149 (MQ=255) tCAAATCTATCAGTCGCCCAAGAGATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGGCAGCGCttgt < 5:67877/148‑4 (MQ=255) cTATCAGTCGCCCAAGAGATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTcc > 6:128707/1‑149 (MQ=255) aTCAGTCGCCCAAGAGATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAgc < 5:192959/134‑1 (MQ=255) aTCAGTCGCCCAAGAGATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAgc > 6:192959/1‑134 (MQ=255) gTCTCCCAAGAGATATTTCTCGACCATACTCCAGACAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATTCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑Ca < 4:52672/149‑1 (MQ=255) gTCGCCCAAGAGATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGGGCTACGTTCTTCCGTGA‑Ca < 4:57654/149‑1 (MQ=255) gTCGCCCAAGAGATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑Ca > 7:297262/1‑149 (MQ=255) tCGCCCAAGAGATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAg > 4:374752/1‑149 (MQ=255) ccAAGAGATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTAAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTcc < 2:124055/149‑1 (MQ=255) cAAGAGATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAgc > 8:341213/1‑124 (MQ=255) cAAGAGATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAgc < 7:341213/124‑1 (MQ=255) cAAGAGATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCg > 2:321839/1‑149 (MQ=255) agagATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCATCCCGCAGCATCTACGACACTTCTACATGCATAAGAACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCAGTGA‑AAGCTcag > 5:144755/1‑145 (MQ=255) agagATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCgta < 3:270397/149‑1 (MQ=255) atTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTg > 5:355594/1‑149 (MQ=255) tttCTCGACCATACTCCATCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTg < 3:257454/148‑1 (MQ=255) tttCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTgg < 6:355594/149‑1 (MQ=255) ctcGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGcc < 5:128707/148‑1 (MQ=255) gACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGaa < 4:93729/148‑1 (MQ=255) aTACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAattatt < 7:23271/149‑1 (MQ=255) ccgCCAAAACCTCGGTAGATCTCAATGACCAGGCCGCAGCATGTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATtgtgt < 3:195471/145‑1 (MQ=255) cAGCCAACACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATtgtgt < 4:293034/147‑1 (MQ=255) cAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATtgtgt < 8:221610/147‑1 (MQ=255) gCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAg > 5:84436/1‑149 (MQ=255) aaCCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAAt < 2:239982/149‑1 (MQ=255) ggTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGACCAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGa < 1:270033/148‑1 (MQ=255) ggTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGa < 3:67413/147‑1 (MQ=255) aTCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCgcc > 4:106766/1‑147 (MQ=255) aaTGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCa < 5:36085/146‑1 (MQ=255) aaTGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGc > 3:187074/1‑149 (MQ=255) cAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAg < 8:297262/149‑1 (MQ=255) cAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAg > 6:73197/1‑149 (MQ=255) aGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAgg > 3:309072/1‑149 (MQ=255) gCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGc > 3:84413/1‑141 (MQ=255) gCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGc < 4:84413/141‑1 (MQ=255) cGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGctct < 7:71683/149‑1 (MQ=255) ttCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACa < 5:208297/111‑1 (MQ=255) ttCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACa > 6:208297/1‑111 (MQ=255) ttCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATcccc > 2:270062/1‑149 (MQ=255) cTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGACAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCAccc < 3:359776/148‑1 (MQ=255) gCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCACCCATAAccc > 8:143658/1‑149 (MQ=255) gCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGAGACCACGCTTGTAGGCTCTGACATGGCCAGATCACCCATAAccc > 8:217185/1‑149 (MQ=255) cATACGCACTTACACTCGGTGCTGACAATCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCACCCATAAccc < 6:144755/148‑1 (MQ=255) tACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCACCCATAACCCGCa < 4:309072/149‑1 (MQ=255) ttACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCACCCATAACCCGCAGTACgg > 5:160122/1‑148 (MQ=255) acacTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCACACATAACCCGCAGTACGGaa > 8:323132/1‑148 (MQ=255) acTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCACCCATAACCCGCAGTACGGAAAac < 3:374752/149‑1 (MQ=255) ggTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCACCCATAACCCGCAGTACGGAAAACAcct < 7:288545/149‑1 (MQ=255) aCAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATc < 8:88975/73‑1 (MQ=255) aCAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATc > 7:88975/1‑73 (MQ=255) gtaGCGCTGGCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGa > 3:116188/3‑100 (MQ=255) gtaGCGCTGGCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGa < 4:116188/98‑1 (MQ=255) aaGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGATCCGTAGTACTGGCCGAATTATTGTGTGACGCCAATCAGCCAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCACCCATAACACGAAGTACGGAAAACACCTCCTTACCg > 1:236869/1‑148 (MQ=255) gcgcTGGCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCAc < 8:142236/111‑1 (MQ=255) gcgcTGGCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCAc > 7:142236/1‑111 (MQ=255) gcgcTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCACCCATAACCCGCAGTACGGAAAACACCTCCTTACCGCAg < 5:73197/149‑1 (MQ=255) gcTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCACCCATAACCCGCAGTACGGAAAACACCTCCTTACCGCAGGc < 1:321839/149‑1 (MQ=255) cTGCCAGCGCTACGTTCTTCCGTGA‑CCGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGAGAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCACCCATAACCCGCAGTACGCAAAACACCTCCTTACCGCAGGCt > 1:316391/1‑149 (MQ=255) ccAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCACCCATAACCCGCAGTACGGAAAACACCTCCTTACCGCAGGCTTa > 2:25832/1‑148 (MQ=255) | GAGTCAACTGTCAAATCTATCAGTCGCCCAAGAGATATTTCTCGACCATACTCCAGCCAAAACCTCGGTAGATCTCAATGACCAGCCCGCAGCATCTACGACACTTCTACATGCATACGCACTTACACTCGGTGCTGACAAGCGCTGCCAGCGCTACGTTCTTCCGTGA‑CAGCTCCGTAGTACTGGCCGAATTATTGTGTGAAGCCAATCAGACAGCGACCACGCTTGTAGGCTCTGACATGGCCAGATCACCCATAACCCGCAGTACGGAAAACACCTCCTTACCGCAGGCTTA > NC_002947/3936138‑3936432 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |