Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,242,997 | G→A | 9.3% | intergenic (‑161/+33) | PP_3719 ← / ← PP_3720 | putrescine‑binding protein/NAD(P)H quinone oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,242,997 | 0 | G | A | 9.3% | 146.0 / 3.2 | 53 | intergenic (‑161/+33) | PP_3719/PP_3720 | putrescine‑binding protein/NAD(P)H quinone oxidoreductase |
Reads supporting (aligned to +/- strand): ref base G (23/25); new base A (3/2); total (26/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.69e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.87e-01 |
GAGTGCTCCGGATCGAGCCGATGGGTTCACTATCGGTGGATTCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAACACCAGTGGCTGGTCGTCCGAGAGCTGCTCCAGACGCTGCCGGTATTGCTGCAGAAAGTCCTGC > NC_002947/4242853‑4243141 | gAGTGCTCCGGATCGAGCCGATGGGTTCACTATCGGTGGATTCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGc < 6:98020/149‑1 (MQ=255) aGTGCTCCGGATCGAGCCGATGGGTTCACTATCGGTGGATTCGCCAAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCACGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCg > 3:310703/1‑149 (MQ=255) cGGATCGAGCCGATGGGTTCACTATCGGTGGATTCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAg > 4:325837/1‑149 (MQ=255) cGGATCGAGCCGATGGGTTCACTATCGGTGGATTCGCCCAGGGGTGACATACCCCGAATGTGTGGGGGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCAACGCGGCCCCaa < 8:147529/149‑2 (MQ=255) aTCGAGCCGATGGGTTCACTATCGGTGGATTCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGG‑CCCAGTGGt < 8:12546/149‑1 (MQ=255) aGCCGATGGGTTCACTATCGGTGGATTCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCaa < 4:310703/149‑1 (MQ=255) ccGATGGGTTCACTATCGGTGGATTCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATa < 6:78856/149‑1 (MQ=255) gATGGGTTCACTATCGGTGGATTCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATa > 4:276799/1‑147 (MQ=255) gATGGGTTCACTATCGGTGGATTCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACa < 5:340824/149‑1 (MQ=255) gATGGGTTCACTATCGGTGGATTCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACa < 3:276799/149‑1 (MQ=255) aTGGGTTCACTATCGGTGGATTCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAg < 7:292166/149‑1 (MQ=255) gTTCACTATCGGTGGATTCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGgag > 2:146177/1‑148 (MQ=255) ttCACTATCGGTGGATTCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGgaga > 4:262071/1‑148 (MQ=255) gATTCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGc > 1:250605/1‑149 (MQ=255) gATTCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGc > 5:349479/1‑149 (MQ=255) aTTCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCg < 1:148636/149‑1 (MQ=255) ttCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCgg > 3:199722/1‑149 (MQ=255) gCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTa > 5:123590/1‑149 (MQ=255) gCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTa > 5:4537/1‑149 (MQ=255) gCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTa < 4:199722/149‑1 (MQ=255) cAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACaa < 1:228249/149‑1 (MQ=255) aGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACaa < 2:350435/148‑1 (MQ=255) aGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACaa > 1:350435/1‑148 (MQ=255) tGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCtt > 5:324360/1‑148 (MQ=255) aCATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCa < 3:325837/148‑1 (MQ=255) aTACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCg < 6:324360/149‑1 (MQ=255) aCCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGa > 7:316877/1‑148 (MQ=255) aCCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCAACGCGGcc < 2:30732/95‑1 (MQ=255) aCCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCAACGCGGcc > 1:30732/1‑95 (MQ=255) cccGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGCCAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCCCGTCAGCGGGTACAACGCGTCATctcact > 4:238707/1‑144 (MQ=255) cccGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACt > 6:20153/1‑149 (MQ=255) ccGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTg > 3:95938/1‑149 (MQ=255) ccGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCAGACAAAATGTTGGGGCCGCATTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTg > 7:249579/1‑149 (MQ=255) gtgggtggTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGgc > 1:295855/1‑149 (MQ=255) tggtCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCggg < 3:262071/149‑1 (MQ=255) tCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAac < 8:316877/149‑1 (MQ=255) gTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGCacac > 4:46135/1‑149 (MQ=255) gTGGCGCTGGAAGGTTGGCAGAACATCGTATGCCGTCAAAAGGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGACAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAACACCAGTGGCTGgtc < 8:284670/149‑1 (MQ=255) cgcTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGcgcg > 6:374164/1‑126 (MQ=255) cgcTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGcgcg < 5:374164/126‑1 (MQ=255) cgcTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAACACCAGTGGCTGGTCGTcc < 4:95938/149‑1 (MQ=255) gTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAACACCAGTGGCTGGTCGTCCGAGAgctgc < 6:4537/149‑1 (MQ=255) gCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAACACCAGTGGCTGGTCGTCCGAGAGCTGCTcc < 6:349479/148‑1 (MQ=255) aCATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAACACCAGTGGCTGGTCGTCCGAGAGCTGCTCCAGACGc < 5:20153/149‑1 (MQ=255) aTCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAacac > 2:238012/1‑113 (MQ=255) tCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAACACCAGTGGCTGGTCGTCCGAGAGCTGCTCCAGACGCTGc > 4:230998/1‑149 (MQ=255) gTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAACACCAGTGGCTGGTCGTCCGAGAGCTGCTCCAGACGCTGCCg < 6:123590/149‑1 (MQ=255) cAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAACACCAGTGGCTGGTCGTCCGAGAGCTGCTCCAGACGCTGCCGGTATtgctg < 8:249579/149‑1 (MQ=255) aaaaTGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAACACCAGTGGCTGGTCGTCCGAGAGCTGCTCCAGACGCTGCCGGTATtgctgc < 1:146177/149‑1 (MQ=255) ttGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAACACCAGTGGCTGGTCGTCCGAGAGCTGCTCCAGACGCTGCCGGTATTGCTGCAGaaa < 3:230998/148‑1 (MQ=255) ttGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCAGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAACACCAGTGGCTGGTCGTCCGAGAGCTGCTCCAGACGCTGCCGGTATTGCTGCAGAAAg > 1:102161/1‑149 (MQ=255) tGGGGCCGCAACGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAACACCAGTGGCTGGTCGTCCGAGAGCTGCTCCAGACGCTGCCGGTATTGCTGCAGAAAGt > 4:247851/1‑149 (MQ=255) ccGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAACACCAGTGGCTGGTCGTCCGAGAGCTGCTCCAGACGCTGCCGGTATTGCTGCAGAAAGTCCTGc > 3:230205/1‑149 (MQ=255) | GAGTGCTCCGGATCGAGCCGATGGGTTCACTATCGGTGGATTCGCCCAGGGGTGACATACCCCGAATGTGTGGGTGGTCGTTTTTTGGCAGGTGGCGCTGGAAGGTTTGCAGAACATCGTATGCCGACAAAATGTTGGGGCCGCGTTGCGGCCCCAGTGGTCAATACAGGAGAAAGGTCACGTCAGCGGGTACAACGCTTCATCGAACTGCGCCAGGCGCGGGAACACCAGTGGCTGGTCGTCCGAGAGCTGCTCCAGACGCTGCCGGTATTGCTGCAGAAAGTCCTGC > NC_002947/4242853‑4243141 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |