| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,291,094 | A→C | 5.7% | L498R (CTG→CGG) | PP_3761 ← | two‑component system sensor histidine kinase/response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,291,094 | 0 | A | C | 5.7% | 275.1 / 6.9 | 88 | L498R (CTG→CGG) | PP_3761 | two‑component system sensor histidine kinase/response regulator |
| Reads supporting (aligned to +/- strand): ref base A (43/40); new base C (3/2); total (46/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.54e-01 | |||||||||||
CGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCTTCGGTGCGTTCCGACAACTGCTCGT > NC_002947/4290948‑4291241 | cGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGTGCAGc > 5:50313/1‑149 (MQ=255) gagaATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGc < 2:38949/148‑1 (MQ=255) gagaATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCt > 4:349919/1‑149 (MQ=255) aaTGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCTAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCTGCGCACGCCGCTCaa < 3:251068/149‑2 (MQ=255) aaTGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCTGCGCACGCCGCTCaa < 2:6552/149‑2 (MQ=255) aTGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATg < 8:227670/149‑1 (MQ=255) tGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATgg < 2:65141/149‑1 (MQ=255) tGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATgg < 2:32896/149‑1 (MQ=255) gTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGTGCAGCTCATGGGAc < 6:50313/148‑1 (MQ=255) tCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGTCCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTg > 1:290812/1‑149 (MQ=255) tCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTg < 5:134906/149‑1 (MQ=255) tCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTg > 2:164601/1‑149 (MQ=255) ggTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGc > 7:355031/1‑148 (MQ=255) gTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGc > 3:53944/1‑147 (MQ=255) gCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAt > 5:317801/1‑149 (MQ=255) cAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAt‑‑t > 2:326707/1‑149 (MQ=255) cAGAGCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAt‑‑t < 8:81520/149‑1 (MQ=255) gATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCg < 8:355031/149‑1 (MQ=255) aTCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCg > 5:307843/1‑148 (MQ=255) tCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGa < 1:164601/149‑1 (MQ=255) tCGCTGCCGGCCGAGTACATGGATTCGGCGAACGTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGGGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGa < 4:230083/149‑1 (MQ=255) cGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGa < 4:53944/148‑1 (MQ=255) gTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGAc < 6:155903/148‑1 (MQ=255) ttGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCt < 4:131156/118‑1 (MQ=255) ttGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCt > 3:131156/1‑118 (MQ=255) ggccgAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACt < 2:346773/149‑1 (MQ=255) cgAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑Gc < 3:349919/149‑1 (MQ=255) gttgATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGTGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCg < 6:1699/146‑1 (MQ=255) aTTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTg > 5:210519/1‑148 (MQ=255) ttCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTg > 3:17646/1‑147 (MQ=255) ttCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTg > 1:250972/1‑147 (MQ=255) cGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAg < 4:245245/148‑1 (MQ=255) gCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCACCAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGCCAGGTGGGCGAGGAAT‑‑TCGGACGTATCCTT‑‑GCTCGATCTCTGCAg > 8:75962/1‑146 (MQ=255) gCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGgtc > 1:230477/1‑149 (MQ=255) gCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTGGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAg < 7:75962/146‑1 (MQ=255) ctcctcGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCt > 1:222645/1‑149 (MQ=255) ctcctcGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTAATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGCTCGCTGAAGGTCGTCGGCACGGGCCt > 1:228423/1‑149 (MQ=255) cctcGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCg < 5:51859/124‑1 (MQ=255) cctcGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCg > 6:51859/1‑124 (MQ=255) cctcGCTGAGGTTGCCTTCAGCGTTTGCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGGGCGCAGCGCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGc < 5:357259/149‑1 (MQ=255) ctcGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTg > 4:41129/1‑147 (MQ=255) tcGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTg > 1:172315/1‑90 (MQ=255) tcGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTg > 1:178118/1‑90 (MQ=255) tcGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTg < 2:178118/90‑1 (MQ=255) tcGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTg < 2:172315/90‑1 (MQ=255) gCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCTTGCAGCt > 7:292799/1‑149 (MQ=255) gCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGc < 4:137206/148‑1 (MQ=255) aGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAg < 3:41129/149‑1 (MQ=255) ttGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTg > 1:262546/1‑149 (MQ=255) ccTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTgcgc < 6:210519/149‑1 (MQ=255) cTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTGGAGCTgcagg < 6:317801/149‑4 (MQ=255) gtgttCTGCCAACAGCTGCGCCCCGCTCAGCGAGCTGCTGCGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGgctca < 8:289365/146‑1 (MQ=255) ttttCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGgctcag > 6:159694/1‑149 (MQ=255) ttCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTg < 5:120685/67‑1 (MQ=255) ttCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTg > 6:120685/1‑67 (MQ=255) tGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCAt > 7:234446/1‑149 (MQ=255) ccAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATAGGGGGCCTTTAACTTTCGGTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGgctcagct > 1:315310/1‑148 (MQ=255) ccAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCg > 3:272040/1‑149 (MQ=255) ccAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCg > 6:218404/1‑149 (MQ=255) aaCAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGa < 4:193203/74‑1 (MQ=255) aaCAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGa > 3:193203/1‑74 (MQ=255) cAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCt > 8:65727/1‑149 (MQ=255) gCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑g < 2:262546/149‑1 (MQ=255) gCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑g < 2:230477/149‑1 (MQ=255) ccAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGATCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGGCGTCGGCACGGGCATGAAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTc > 8:256221/1‑148 (MQ=255) cAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTc > 4:301918/1‑147 (MQ=255) ggATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAgc < 4:17646/149‑1 (MQ=255) aGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCtt < 7:65727/148‑1 (MQ=255) gCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑g < 2:363910/134‑1 (MQ=255) gCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑g > 1:363910/1‑134 (MQ=255) gCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCTTCg < 8:67321/149‑1 (MQ=255) gAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCTTCGGt < 8:234446/149‑1 (MQ=255) aGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGc < 6:101391/104‑1 (MQ=255) aGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGc > 5:101391/1‑104 (MQ=255) gCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCATGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCTTCGGTGc > 5:367411/1‑149 (MQ=255) ccatGAGCTGCGCACGCCGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCTTCGGTGCGt > 6:148958/4‑149 (MQ=255) ccatGAGCTGCGCACGCCGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCTTCGGTGCGt > 7:283718/4‑149 (MQ=255) ccatGAGCTGCGCACGCCGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCTTCGGTGCGt > 2:237042/4‑149 (MQ=255) gTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCTTCGGTGCGtt > 8:227230/1‑149 (MQ=255) gTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCTTCGGTGCGtt > 5:163304/1‑149 (MQ=255) ttGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCTTCGGTGCGTTc < 5:218404/149‑1 (MQ=255) ttGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCTTCGGTGCGTTc > 3:188793/1‑149 (MQ=255) cgAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCTTCGGTGCGTTcc < 7:7603/148‑1 (MQ=255) gAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCTTCGGTGCGTTcc > 8:95596/1‑148 (MQ=255) aGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCTTCGGTGCGTTCCGa > 8:357227/1‑149 (MQ=255) aGCGGCGGGCGGAGCTCCTGGGACATGTTGGCGCGGAAT‑‑TCGGACTGGTTCGT‑‑GCTCGCTCGCTGCAGGTCGTGGGCGCGGGCCTGCAGCTCCAGCTGCGCGTGGCTCAGCTCCTCGGGCGG‑GGGGGCCAGCGGGTCGGTGGGttgg > 8:7603/1‑145 (MQ=255) cgcacgccgcTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTTCGCGGTCCAGCGCTTCGGTGCGTTCCGACAAc < 1:237042/145‑1 (MQ=255) gcAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCTTCGGTGCGTTCCGACAACTGCTCg < 2:250972/149‑1 (MQ=255) cAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGATCATCGTTCTT‑GCGGTACACAGCTTCGGTGCGTTCCGACAAATGCTctt > 3:25951/1‑147 (MQ=255) | CGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAAT‑‑TCGGACTTATACTT‑‑GCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCTCCAGCTGCGCCTGGCTCAGCTCATCGTTCTT‑GCGGTCCAGCGCTTCGGTGCGTTCCGACAACTGCTCGT > NC_002947/4290948‑4291241 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |