| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 82.1% | 73.9 / 12.0 | 28 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (2/3); new base A (10/13); total (12/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGC > NC_002947/278602‑278870 | tACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑AA‑acccg > 1:49319/1‑146 (MQ=255) gACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACAt > 7:156627/1‑148 (MQ=255) cAGACGTGTGCTGGTCCGGTGGTCCGGTATATATAACCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTTTTACAGAGGTGCCGTGCTCTTCTC‑GGG‑TAAA‑CCCTCTCCTACACACATGc < 7:150695/148‑1 (MQ=255) ggtgtGGTGGTGGGGTGGTCGGGTTTTTTTACGCTATTGTTTTATATATTTTTTTTGAAGTAAGTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTc < 8:130432/146‑1 (MQ=255) gtgtGCTGGTCCGGTGGTCCTGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCaa < 2:96006/148‑1 (MQ=255) gCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTATGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGAt < 8:7574/147‑1 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCtg < 4:132533/148‑1 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACAAACATGCCTCAAGATCtgt > 5:160520/1‑147 (MQ=255) ggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTa < 8:88241/148‑1 (MQ=255) taCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAc > 6:62427/1‑148 (MQ=255) acacTAATGATTTATAAAATTTTTATTAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGTCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAc < 5:12542/144‑1 (MQ=255) tGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCCCTGTAGGAGCGGGTTTACCCGCGaaa > 7:144546/1‑148 (MQ=255) tttttATGAACTAACTTTTTGGAATATTTATCGAAGGGGGATTTGTTACAGCGGGGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTCCACACTTGCCTCAAGAGCTGTGCACTGTCGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAg < 8:39861/148‑1 (MQ=255) ttATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGt < 4:128116/147‑1 (MQ=255) tATTAACTAACTTTTTGCAATATTTATAGAAGGGGGATTTGTTACCGAGGTGCCGGGCTCTGCGC‑GGG‑TAAA‑CCCGCTCCTCCACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGtt < 6:26088/147‑1 (MQ=38) gAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACt > 4:44879/1‑148 (MQ=255) caactaactTTTTGTATTATTTATACCCGGGGGATTTTTTACAGAGGGGCCGGCCTCTTCGC‑GGT‑T‑AACCCCGCCCCTACACACAGCCCCCAACATCTGTCCCCTGTCGGCGCGGTTTAACCCGCGAAAGGGCCGGAACAGGTTTAc < 2:62337/146‑1 (MQ=255) taactTTTTGTAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCGCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa < 7:22091/148‑1 (MQ=255) tttttGTAATATTTATATATGGGGGATTTGTTACAGTGGTGCGGGGCTGTTCGG‑GGG‑TAAA‑CCCGCTCCTACACACTTGCCTCAATATCTGTGCAGTGTAGTAGGGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGcc < 6:160520/148‑1 (MQ=255) tatTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCGCCAACCCCCATGCCTCAAGATCTGTGCCCAGTAGGAGCGGGTTGACCCGCGCAAGGGCCGGACCAGGGTTACTCGGAGGCCGCAGGCCCg > 8:123318/1‑148 (MQ=255) atTTATAGACGGGGGTGTTGTTCCAGTGGTGCCGGGCTCTGGGG‑GGGAA‑AA‑CCCGCGCCTCCACACATGCCTCAAGAGCGGTCCACTGTAGCCGGGGGTTAACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGa < 3:162344/148‑1 (MQ=255) tttATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGG‑A‑AA‑CCCGCTCCGACCCCCCTGCCGCCAGATCGGTGGACGGTAGGAGCGGGTTTACCCGCGACAGGGCCGGCCCCGGTTTACGAGGAGGCCGCCGGCCCggg > 4:89000/1‑146 (MQ=255) ttATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGACTAAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTACCGAg > 1:99888/1‑147 (MQ=39) ttATAGAAGGGGCATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGG‑A‑AA‑CCCGCTCCTACACCCAGGCCTCACGAGCTGGGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAg < 7:78715/147‑1 (MQ=38) gATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCaa > 3:37966/1‑147 (MQ=255) ttACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACCCCCCTGCCGCAAGCTCTGTGGCCGGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACCGGGTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGCACTGc > 7:130970/1‑148 (MQ=37) gagGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACCCCTGCCTCCAGATGTGTGGACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGGGTTACTCGGAGGCCGCAGTCCCGCGGCACTTGCGCAAGACCTGCCGCGt > 1:108204/1‑148 (MQ=37) gTGCCGGGCGGTTCGC‑GGG‑TAAA‑CCCGCTCCAACCCACATGCCGCAAGATCTGTCCACTGTTGGAGGGGGTTTACCCGCTAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCC‑CGGAACTTGCGCAAGAACTGCCGCGTACGc < 5:76027/148‑1 (MQ=255) | TACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGC > NC_002947/278602‑278870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |