New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1441693	NA (NA)	31 (1.040)	24/284	0.3	100%	intergenic (+37/+395)	PP_1260/ghrB	transposase/2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase
	?	NC_002947	1844449 =	0 (0.000)					coding (345/2754 nt)	gacS	sensor protein GacS

TTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAgag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1441548‑1441693 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGC  >  NC_002947/1844449‑1844593                                                                                                                                                                                                                                                                                                     TTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGTGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGA                                                                                                                                                 <  5:76421/148‑1     GTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTTCTTCGCAAACCCCGGGAACAGGGGGATCAACTGGTGGCCGCGTGAGTGGGTAGAAAACAAAGGGGTGCATTTTTTTTGATGAGAGTTG                                                                                                                                             >  1:23056/1‑148      TTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTTCTTCGCAAACCCCGGAAAATGGGGTATAAACTGGTGGCCGCTTGAGTGCTTAGAAAAAAATGGGTTGCATTTTTTTTGATTAGATTTGt                                                                                                                                            >  8:73624/1‑147            AAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCG                                                                                                                                      <  5:160577/148‑1                        AGTTCGACACCAGAAGCCCAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTG                                                                                                                          <  4:13107/148‑1                                                GGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGG                                                                                                  <  5:36007/148‑1                                                             TTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCA                                                                                     >  3:10468/1‑148                                                             TTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCA                                                                                     >  3:151266/1‑148                                                             TTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCA                                                                                     >  3:153828/1‑148                                                                GCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATAGAGAATGCTCGGGCCGGCGTGGGCCAGGC                                                                                  >  8:59434/1‑148                                                                  TTCGCAATGCCGGGAATCTGGGGTATCAACTGGTGGCCGCGTGAGTGCTTAGAACACACTGGGTTGCATTTTGTTTGAGGAGAGTGGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGC                                                                                <  7:39951/148‑1                                                                  TTCGCAATGCCCGGAAACTGGGGAATCAACTGGTGGCCGCTTGATTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGC                                                                                <  6:106636/148‑1                                                                     GCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTG                                                                             >  6:139786/1‑148                                                                      CAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGC                                                                            <  3:96550/148‑1                                                                                            CAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCA                                                       <  5:84664/147‑1                                                                                               CTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGC                                                   >  5:130682/1‑148                                                                                               CTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGC                                                   <  3:87753/148‑1                                                                                               CTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGC                                                   <  7:73624/148‑1                                                                                                TGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCG                                                  >  1:46846/1‑148                                                                                                    GGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGC                                               >  4:75469/1‑147                                                                                                         CTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCG                                         <  7:129662/148‑1                                                                                                                  TTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTTGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGACACTGATCGCACATCGGCCTGCT                                  >  5:80313/1‑146                                                                                                                  TTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCT                                  >  2:60169/1‑146                                                                                                                  TTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCT                                  >  1:81113/1‑146                                                                                                                         ACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTT                         <  4:10468/148‑1                                                                                                                           AATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGT                       <  2:120063/148‑1                                                                                                                             TGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCTGGGCCAGAAACGCCACTGCGCTCACATCGGCCTGCTCCAGGGTTTGTGC                     <  7:94693/148‑1                                                                                                                                GTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGG                   <  8:110716/147‑1                                                                                                                                 TTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCA                 >  3:55974/1‑148                                                                                                                                  TGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAA                >  4:49397/1‑148                                                                                                                                             TGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGT     >  1:14524/1‑148                                                                                                                                                 GAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTATCCAGTTGC  >  2:85445/1‑147                                                                                                                                                                                                                                                                                                     TTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAgag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1441548‑1441693 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGC  >  NC_002947/1844449‑1844593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.