New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3607007 = | 27 (0.890) | 4 (0.140) | 4/278 | 3.4 | 12.5% | coding (2110/2265 nt) | PP_3182 | GGDEF domain‑containing protein |
? | NC_002947 | 3607049 = | 30 (1.030) | coding (2068/2265 nt) | PP_3182 | GGDEF domain‑containing protein | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
CTACGCCGGCTTTGCCCACCTGCATTCACTGCCCCTGAGCAAGCTGAAGATCGATCGTTCGCTGATCGCGGCGCTGTCCAACAGCCATGACGACAGCCCAATCGTGTCCTCCACCATCATCCTGGCCAAGCGCCTGGGCCTGGAAG‑TGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3607158‑3607007 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtggAGGACACGATTGGGCTGTCGTCATGGCTGTTGGACAGCGCCGCGATCAGCGAACGATCGATCTTCAGCTTGCTCAGGGGCAGTGAATGCAGGTGGGCAAAGCCGGCGTA > NC_002947/3607049‑3607157 CTACGCCGGCTTTGCCCACCTGCATTCACTGCCCCTGAGCAAGCTGAAGATCGATCGTTCGCTGATCGCGGCGCTGTCCAACAGCCATGACGACAGCCCAATCGTGTCCTCCACCATCATCCTGGCCAAGCGCCTGGGCCTGGAAG‑T < 3:111096/147‑1 GCCGGCTTTGCCCACCTGCATTCACTGCCCCTGAGCAAGCTGAAGATCGATCGTTCGCTGATCGCGGCGCTGTCCAACAGCCATGACGACAGCCCAATCGTGTCCTCCACCATCATCCTGGCCAAGCGCCTGGGCCTGGAAG‑TGGTG < 1:160486/147‑1 CTCCACCATCATCCTGGCCAAGCGCCTGGGCCTGGAAG‑TGGTGGAGGACACGATTGGGCTGTCGTCATGGCTGTTGGACAGCGCCGCGATCAGCGAACGATCGATCTTCAGCTTGCTCAGGGGCAGTGAATGCAGG > 5:68238/1‑136 TCCACCATCATCCTGGCCAAGCGCCTGGGCCTGGAAG‑TGGTGGAGGACACGATTGGGCTGTCGTCATGGCTGTTGGACAGCGCCGCGATCAGCGAACGATCGATCTTCAGCTTGCTCAGGGGCAGTGAATGCAGGT < 6:68238/136‑1 CACCATCATCCTGGCCAAGCGCCTGGGCCTGGAAG‑TGGTGGAGGACACGATTGGGCTGTCGTCATGGCTGTTGGACAGCGCCGCGAGCAGCGCCCGCTCGATCTTCAGCTTGCTCAGGGGCAGTGAATGCAGGTGGGCAAAGCCGGC > 1:61188/1‑147 CATCATCCTGGCCAAGCGCCTGGGCCTGGATGATGGTGGAGGACACGATTGGGCTGTCGTCATGGCTGTTGGACAGCGCCGCGATCAGCGAACGATCGATCTTCAGCTTGCTCAGGGGCAGTGAATGCAGGTGGGCAAAGCCGGCGTA > 3:106328/1‑148 CTACGCCGGCTTTGCCCACCTGCATTCACTGCCCCTGAGCAAGCTGAAGATCGATCGTTCGCTGATCGCGGCGCTGTCCAACAGCCATGACGACAGCCCAATCGTGTCCTCCACCATCATCCTGGCCAAGCGCCTGGGCCTGGAAG‑TGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3607158‑3607007 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtggAGGACACGATTGGGCTGTCGTCATGGCTGTTGGACAGCGCCGCGATCAGCGAACGATCGATCTTCAGCTTGCTCAGGGGCAGTGAATGCAGGTGGGCAAAGCCGGCGTA > NC_002947/3607049‑3607157 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |