New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4808179	0 (0.000)	5 (0.190)	5/250	2.7	30.3%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988949	23 (0.880)					intergenic (+243/‑303)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

GCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAA  >  NC_002947/4808051‑4808323                                                                                                                                 |                                                                                                                                                 gcgcTTTGGCGGGGAGGGGGTGGGCGGGAGGTGGGCAGCGCCTGGGAGGTGTTCGCCGGGGGATGTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaa                                                                                                                                <  5:41035‑M1/147‑19 (MQ=255)                 gtgtTGGGCGGGAGGGTGTCAGCGCCGGGGAGGTGTTCGCCGGGGGAGTTTCAGCGCCTGGGAGGTGTGCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgt                                                                                                               <  5:48161‑M1/148‑36 (MQ=255)                           ggAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaa                                                                                                     >  2:107455‑M1/1‑103 (MQ=255)                                                            gggATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttg                                                                    <  1:107455‑M1/148‑79 (MQ=255)                                                                ttttCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggc                                                                >  3:19299‑M1/1‑66 (MQ=255)                                                                                                              gagaTCGAGCGCCGCCCGCGcggcgcgtcgcggggaaacccgctcctacgtttgtttctggccaatccctcctgggccaggcgcgcgcgaccgccttgtttgtacgacgcgatatcgaggcgtgcgccagggggctcgcgtgcgcgtc                  <  7:21220‑M1/148‑129 (MQ=255)                                                                                                                gaTCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttctggccaatccctcctgtgccaggcgcgcgcgaccgccttgtttgtacgacgcgatatcgaggcgtgcgccagggggctcgcgtgcgcgtcc                 <  6:122599‑M1/147‑130 (MQ=255)                                                                                                                   cGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttctggccaatccctcctgtgccaggcgcgcgcgaccgccttgtttgtacgacgcgatatcgaggcgtgcgccagggggctcgcgtgcgcgtcccaca             <  8:24533‑M1/148‑134 (MQ=255)                                                                                                                     aGCGCCGCGCGGGcggcgcttcgcgggtaaacccgctcctacgtttgtttctggccaatccctcctgtgccaggcgcgcgcgaccgccttgtttgtacgacgcgatatcgaggcgtgcgccag                                    >  8:38727‑M1/1‑13 (MQ=255)                                                                                                                      gcgcCGCGCGGGcggcgcttcgcgggtaaacccgctcctacgtttgtttctggccaatccctcctgtgccaggcgcgcgcgaccgccttgtttgtacgacgcgatatcgaggcgtgcgccagg                                   <  7:38727‑M1/123‑112 (MQ=255)                                                                                                                           gcccgcGcggcgcttcgcgggtaaacccgctcctacgtttgtttctggccaatccctcctgtgccaggcgcgcgcgaccgccttgtttgtacgacgcgatatcgaggcgtgcgccagggggctcgcgtgcgcgtcccacaggaataac     <  3:75566‑M1/148‑142 (MQ=255)                                                                                                                             ccgcGcggcgcttcgcgggtaaacccgctcctacgtttgtttctggccaatccctcctgtgccaggcgcgcgcgaccgccttgtttgtacgacgcgatatcgaggcgtgcgccagggggctcgcgtgcgcgtcccacaggaataactg   <  2:147706‑M1/148‑144 (MQ=255)                                                                                                                              cgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttctggccaatccctcctgtgccaggcgcgcgcgaccgccttgtttgtacgacgcgatatcgaggcgtgcgccagggggctcgcgtgcgcgtcccacaggaataactgg  <  2:40065‑M1/148‑145 (MQ=255)                                                                                                                                 |                                                                                                                                                 GCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAA  >  NC_002947/4808051‑4808323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.