New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3862763 =	30 (0.990)	4 (0.140)	4/280	3.4	11.3%	coding (1686/3282 nt)	PP_3413	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	3862825 =	34 (1.160)					coding (1748/3282 nt)	PP_3413	two‑component system sensor histidine kinase/response regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTGATCGGTCTGCTGGAACTGGCCCTGGAAGATAGCCGCAGCGGC  >  NC_002947/3862681‑3862970                                                                                                                                                 |                                                                                                                                                  tGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACa                                                                                                                                                <  8:62273/148‑1 (MQ=255)     tttGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTACTGGAACAGTTa                                                                                                                                            >  3:3029/1‑148 (MQ=255)        gCAGGTGCTGGTGCTGTCAGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTAc                                                                                                                                           <  5:67831/146‑1 (MQ=255)                  gtgctgTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAgg                                                                                                                               >  7:31774/1‑148 (MQ=255)                   tgctgTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGa                                                                                                                              >  1:43399/1‑148 (MQ=255)                             ccTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGa                                                                                                                     >  5:99112/1‑147 (MQ=255)                              ctgctgctgGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGa                                                                                                                     >  1:104551/1‑146 (MQ=255)                                    ctgGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACaccacg                                                                                                             >  6:121271/1‑143 (MQ=255)                                     tgGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGATGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGgcca                                                                                                             <  2:139382/147‑1 (MQ=255)                                       gCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGgccagcc                                                                                                          <  5:47927/148‑1 (MQ=255)                                           gggTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGa                                                                                                       >  8:2765/1‑147 (MQ=255)                                                    tCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCa                                                                                              <  5:48231/147‑1 (MQ=255)                                                      tGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCt                                                                                           >  2:86762/1‑148 (MQ=255)                                                       ggAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCtt                                                                                          >  2:33889/1‑148 (MQ=255)                                                         aaCAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTc                                                                                         <  8:31774/147‑1 (MQ=255)                                                                            tGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCAccatgagccatga                                                                     <  2:16289/148‑1 (MQ=255)                                                                            tGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCAccatgagcca                                                                        >  1:150084/1‑145 (MQ=255)                                                                                cAACCAGCGCAGCGAGGCACAGCACTCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATc                                                                 <  5:125137/148‑1 (MQ=255)                                                                                cAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATc                                                                 <  3:144571/148‑1 (MQ=255)                                                                                   ccAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGc                                                              >  2:148447/1‑148 (MQ=255)                                                                                        gcACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCAccc                                                          >  3:50046/1‑147 (MQ=255)                                                                                         cACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGCCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCg                                                        >  8:446/1‑148 (MQ=255)                                                                                                     gCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTg                                            >  8:41736/1‑148 (MQ=255)                                                                                                     gCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTg                                            >  7:36240/1‑148 (MQ=255)                                                                                                       aCGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTGAt                                          >  6:82287/1‑148 (MQ=255)                                                                                                         gcgcTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTGATCg                                        <  8:141061/148‑1 (MQ=255)                                                                                                             ttCAGGCACAGCTCGCGCCGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTGATCGGTct                                    >  4:68898/1‑148 (MQ=255)                                                                                                                           gcgcTGAGCCGCGGGCTGCTGGAACAGTTCCGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCCCCTTCCTGGCCCCCATGCGCCATGAGATCCGCACCCCGATGAATGCCGTGATCGGTCTGCTGGAACTGGccc                      >  7:121293/1‑148 (MQ=255)                                                                                                                              cTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCTAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCATCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTGATCGGTCTGCTGGAACTGGCCCTgg                   <  6:55562/148‑1 (MQ=255)                                                                                                                                    cgcgGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCCGCCAGCCCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTGATCGGTCTGCTGGAACTGGCCCTGGAAGATa             >  4:131285/1‑148 (MQ=255)                                                                                                                                    cgcgGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTGATCGGTCTGCTGGAACTGGCCCTGGAAGATa             >  4:133516/1‑148 (MQ=255)                                                                                                                                        ggCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTGATCGGTCTGCTGGAACTGGCCCTGGAAGATAgccg         <  1:86762/148‑1 (MQ=255)                                                                                                                                          ctgctgGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTGATCGGTCTGCTGGAACTGGCCCTGGAAGATAgccgca       <  3:68898/148‑1 (MQ=255)                                                                                                                                           tgctgGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCAGGAGATCCGCACCCCGATGAATGCCGTGATCGGTCTGCTGGAACTGGCCCTGGAAGATAgccgcag      >  8:133061/1‑148 (MQ=255)                                                                                                                                                 aaCAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTGATCGGTCTGCTGGAACTGGCCCTGGAAGATAgccgcagcggc  <  4:3029/146‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  TGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTGATCGGTCTGCTGGAACTGGCCCTGGAAGATAGCCGCAGCGGC  >  NC_002947/3862681‑3862970

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.