New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 812298	22 (0.320)	34 (0.500)	27/278	2.6	61.2%	intergenic (‑47/‑181)	PP_0698/PP_0699	LysR family transcriptional regulator/LysE family transporter
	?	NC_002947	3826611 =	NA (NA)					intergenic (‑566/+37)	ptxS/PP_3381	2‑ketogluconate utilization repressor/transposase

CCGCGCCGTGAGTGACGTGCAAGTGCTCGGCGGCGCGCACGAAGCTCTCGGTCTGGGCGGCAATGTCGAAGTAGCGGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/812149‑812298 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGC  >  NC_002947/3826611‑3826758                                                                                                                                                                                                                                                                                                            CCGCGCCGTGAGTGACGTGCAAGTGCTCGGCGGCGCGCACGAAGCTCTCGGTCTGGGCGGCAATGTCGAAGTAGCGGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCT                                                                                                                                                       <  6:257739/149‑1  CGCGCCGTGAGTGACGTGCAAGTGCTCGGCGGCGCGCACGAAGCTCTCGGTCTGGGCGGCAATGTCGAAGTAGCGGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC                                                                                                                                                      <  8:342086/149‑1      CCGTGAGTGACGTGCAAGTGCTCGGCGGCGCGCACGAAGCTCTCGGTCTGGGCGGCAATGTCGAAGTAGCGGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCAT                                                                                                                                                  >  4:312327/1‑149                                   GCGCACGAAGCTCTCGGTCTGGGCGGCAATGTCGAAGTAGCGGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAA                                                                                                                     <  6:178434/149‑1                                   GCGCACGAAGCTCTCGGTCTGGGCGGCAATGTCGAAGTAGCGGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAA                                                                                                                     <  5:363111/149‑1                                             CTCTCGGTCTGGGCGGCAATGTCGAAGTAGCGGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGC                                                                                                           <  7:19860/149‑1                                             CTCTCGGTCTGGGCGGCAATGTCGAAGTAGCGGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTT                                                                                                                         >  8:215475/1‑135                                             CTCTCGGTCTGGGCGGCAATGTCGAAGTAGCGGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTT                                                                                                                         <  7:215475/135‑1                                                  GGTCTGGGCGGCAATGTCGAAGTAGCGGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGC                                                                                                        <  4:316262/147‑1                                                          CGGCAATGTCGAAGTAGCGGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAGGCGGCCACCAG                                                                                                  >  1:339606/1‑145                                                          CGGCAATGTCGAAGTAGCGGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAG                                                                                                  <  2:339606/145‑1                                                             CAATGTCGAAGTAGCGGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATAC                                                                                           <  3:375578/149‑1                                                                 GTCGAAGTAGCGGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCC                                                                                         >  6:60244/1‑147                                                                      AGTAGCGGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTC                                                                                  <  5:324174/149‑1                                                                            GGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCT                                                                            >  1:191990/1‑149                                                                              AAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTT                                                                          >  1:237899/1‑149                                                                               AGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTG                                                                         <  5:60244/149‑1                                                                                GGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGC                                                                        <  2:237899/149‑1                                                                                GGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGC                                                                        >  6:322004/1‑149                                                                                        GTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCA                                                                  >  8:303042/1‑147                                                                                         TGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCCGGCTTTGCGAAGCAAAG                                                               >  7:366536/1‑149                                                                                            CGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCC                                                            <  8:189607/149‑1                                                                                                             CCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGG                                           >  2:295524/1‑149                                                                                                             CCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACACCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGG                                           >  3:318784/1‑149                                                                                                              CCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTACACCCGCTCTCATCAAACAAAATGCAACCCATTTTTTTCTAAGCACTCAAGCGGCCACCTGTTTATACCCCAGTTTCCGGGCTTTGCTAAGCAAAGCCCGGACCTGCCGGTCTTGGC                                          <  6:383559/149‑1                                                                                                                  TTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCT                                      >  8:142636/1‑149                                                                                                                          TGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCG                               <  3:312327/148‑1                                                                                                                          TGCCGGCCTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTC                                <  5:322004/147‑1                                                                                                                               GCCCCTTCGCGGGCACACCCGCTCTAATCAAACAAAATGCAACCCATTGTTTTCTACGCACACAAGCGGCCACCAGTGCATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCC                         <  8:186585/149‑1                                                                                                                                 CTCTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCT                        >  7:376034/1‑148                                                                                                                                   CTTCGCGGGTAAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTC                       >  6:387768/1‑147                                                                                                                                           GTAAACCAGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGAGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGT             >  5:146872/1‑149                                                                                                                                                CCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAA         >  3:384839/1‑148                                                                                                                                                 CCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACA       >  1:102801/1‑149                                                                                                                                                   GCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCTAAATACTCAATACAGTGGTCAAC        >  8:376521/1‑146                                                                                                                                                   GCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACAT      >  3:19750/1‑148                                                                                                                                                    CTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTT                                 <  3:301868/120‑1                                                                                                                                                    CTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTT                                 >  4:301868/1‑120                                                                                                                                                    CTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGACGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATA     >  5:250525/1‑148                                                                                                                                                    CTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCCGACCAGCCGGTCTTGGCTTCTGGCATAGAACAACAAAAAACCTTTTTAAACATA     >  2:334491/1‑148                                                                                                                                                      CTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGC  >  8:244368/1‑149                                                                                                                                                      CTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGC  >  8:285965/1‑149                                                                                                                                                                                                                                                                                                            CCGCGCCGTGAGTGACGTGCAAGTGCTCGGCGGCGCGCACGAAGCTCTCGGTCTGGGCGGCAATGTCGAAGTAGCGGAAGGCGTTGAGTGGCGGCAGTTTCATGATATCCCTGTTCAGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/812149‑812298 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGC  >  NC_002947/3826611‑3826758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.