New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	812296 =	22 (0.320)	50 (0.760)	35/270	1.4	70.5%	intergenic (‑45/‑183)	PP_0698/PP_0699	LysR family transcriptional regulator/LysE family transporter
	?	NC_002947	= 3828304	NA (NA)					intergenic (‑328/+31)	PP_3381/PP_3382	transposase/gluconate 2‑dehydrogenase cytochrome c subunit

CCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTCACCACCTCGGCAACCTCCTGGTCACTCAGGCGCCAGCCGAAAGC  >  NC_002947/3828169‑3828451                                                                                                                                         |                                                                                                                                                    ccTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGGACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGc                                                                                                                                          >  3:205586/1‑147 (MQ=11)  cTAACAAAGCAAACGGCGGCTGGCCCTACCGGGCAAACCGCTTTTTCTTTTTAAAAATGTCCGCGGCGCTGCGCAACTGACGCCGTACACCTCATGTTTGCGGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAg                                                                                                                                       <  2:354535/149‑1 (MQ=11)   tAAAAAAGCAAAAGGCGGCTGGCCTTACCGGCCAAACCGCCTTTTCTTTTTAAAATTTTCAGGGTCGCTGTGGAACTGAACCCGTACACATCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAgg                                                                                                                                      <  2:347785/149‑1 (MQ=11)    aaCAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTGTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACCCCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAggg                                                                                                                                     >  7:266206/1‑149 (MQ=21)      cAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGgcg                                                                                                                                   <  3:163350/149‑1 (MQ=35)          agaaaaGGCGGTTGGCCCGGTAGGGCCAGCCGGCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACGCGTGATGTTTGCTGCGCGGCGGCGCA‑GCCCGGAAGGGCTGGGTGGTCTCCGACGGGCGAGGGCGCTg                                                                                                                                >  2:109485/3‑148 (MQ=11)              aaGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGaaaaa                                                                                                                           >  1:239055/1‑149 (MQ=255)                 gcggcTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAacac                                                                                                                        <  2:239055/149‑1 (MQ=255)                     cTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCa                                                                                                                    <  7:44382/149‑1 (MQ=255)                         cccTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCagcg                                                                                                                 >  6:195848/1‑148 (MQ=255)                          ccTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCagcg                                                                                                                 >  7:35919/1‑147 (MQ=255)                           cTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCagcgaag                                                                                                              >  8:146985/1‑149 (MQ=255)                             aCCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCagcgaagc                                                                                                             >  7:106614/1‑148 (MQ=255)                             aCCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCagcgaagc                                                                                                             >  7:100978/1‑148 (MQ=255)                               cGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGAc                                                                                                          <  3:329369/149‑1 (MQ=255)                                 ggCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGTAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACtt                                                                                                        <  8:106614/149‑1 (MQ=255)                                 ggCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACtt                                                                                                        <  8:100978/149‑1 (MQ=255)                                  gCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACttt                                                                                                       <  7:146985/149‑1 (MQ=255)                                    cAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTa                                                                                                      >  6:32953/1‑148 (MQ=255)                                    cAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTAc                                                                                                     <  1:332622/149‑1 (MQ=255)                                     aaCGGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACa                                                                                                    >  6:139125/1‑149 (MQ=255)                                        cGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCa                                                                                                 >  8:95521/1‑149 (MQ=255)                                                cttttTCAATCTGTCTGCGCCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGTAGGGCTGTGTGATCTCCTACGGGCGAGGGCGCTGAAATACACGTCAGCGAAGCGACTTTACATCACcggcgg                                                                                          <  8:84902/148‑1 (MQ=21)                                                 tttttCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGt                                                                                         >  3:322375/1‑148 (MQ=255)                                                   tttCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACcggcg                                                                                           >  6:364402/1‑144 (MQ=255)                                                   tttCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACcggcg                                                                                           <  5:364402/144‑1 (MQ=255)                                                     tCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGGACCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACg                                                                                     >  1:320997/1‑149 (MQ=255)                                                     tCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACgg                                                                                    >  3:324795/1‑149 (MQ=255)                                                                  gTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGt                                                                        >  3:1933/1‑148 (MQ=255)                                                                   tCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTa                                                                      <  4:322375/149‑1 (MQ=255)                                                                                  aGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGCCTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCg                                                        >  2:107154/1‑148 (MQ=255)                                                                                   gCCGTACACCGCATGTTGGCGGCGCCACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGaa                                                      <  3:19432/149‑1 (MQ=255)                                                                                      gTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGaa                                                      <  1:192940/146‑1 (MQ=255)                                                                                      gTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGaa                                                      >  2:192940/1‑146 (MQ=255)                                                                                          acCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAAtt                                               <  7:95521/149‑1 (MQ=255)                                                                                            cTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACt                                                                                                         >  7:220026/1‑89 (MQ=255)                                                                                            cTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACt                                                                                                         <  8:220026/89‑1 (MQ=255)                                                                                               aTGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCTAAGCTACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTcac                                            <  1:109485/147‑1 (MQ=255)                                                                                               aTGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTcacca                                          >  6:193642/1‑149 (MQ=255)                                                                                                     gctgcGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTCACCACCTCgg                                    >  7:177268/1‑149 (MQ=255)                                                                                                      ctgcGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTCACCACCTCgg                                    <  8:177268/148‑1 (MQ=255)                                                                                                               aGCGCA‑GCCCGGAAGTGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTCACCACCTCGGCAACCTCCTg                          <  5:139125/149‑1 (MQ=255)                                                                                                                gcgcA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTCACCACCTCGGCAACCTCCTgg                         >  1:56501/1‑149 (MQ=255)                                                                                                                   cA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTCACCACCTCGGCAACCTCCTGGTc                       >  2:22428/1‑148 (MQ=255)                                                                                                                   cA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTCACCACCTCGGCAACCTCCTGGTCa                      <  4:324795/149‑1 (MQ=255)                                                                                                                    a‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTCACCACCTCGGCAACCTCCTGGTCAc                     <  8:35919/149‑1 (MQ=255)                                                                                                                      gCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTCACCACCTCGGCAACCTCCTGGTCACt                    <  2:320997/149‑1 (MQ=255)                                                                                                                               ggCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTCACCACCTCGGCAACCTCCTGGTCACTCAGGCGCCa           >  7:102052/1‑149 (MQ=255)                                                                                                                                 cTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTCACCACCTCGGCAACCTCCTGGTCACTCAGGCGCCAGc         <  5:193642/149‑1 (MQ=255)                                                                                                                                    ggTGATCTCCTACGGGCGAGGGCGCTGAAAAAAACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTCACCACCTCGGCAACCTCCTGGTCACTCAGGCGCCAGCCg       >  7:53177/1‑148 (MQ=255)                                                                                                                                      tGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTCACCACCTCGGCACCCTCCTGGTCACTCAGGCGCCAGCCGa      >  6:218047/1‑147 (MQ=255)                                                                                                                                        aTCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTCACCACCTCGGCAACCTCCTGGTCACTCAGGCGCCAGCCGAAAGc  >  1:22140/1‑149 (MQ=255)                                                                                                                                         |                                                                                                                                                    CCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCA‑GCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAAAACACGTCAGCGAAGCGACTTTACATCACCGGCGGTGACGGCACTGCCTTGGTTACCCCAACTGCTGCGAATGAAATTCACCACCTCGGCAACCTCCTGGTCACTCAGGCGCCAGCCGAAAGC  >  NC_002947/3828169‑3828451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.