| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 90.9% | 94.1 / 5.0 | 33 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base A (18/12); total (19/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.47e-01 | |||||||||||
TACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGT‑AACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAG‑CGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCC > NC_002947/278602‑278862 | tACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGT‑AAaccc < 5:290810/147‑2 (MQ=255)tACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGT‑AAaccc > 3:298174/1‑146 (MQ=255) gCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAAGTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTc > 5:80053/1‑147 (MQ=255) cgcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTaca < 6:260312/146‑1 (MQ=255) cgcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTaca > 5:260312/1‑146 (MQ=255) tgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAg > 2:173129/1‑146 (MQ=255) gCTGGTCCGGTGGTCCGGTATATATACACTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGACCGGCTCTTCGAG‑GGTAAACCCGCTACGACACACATGCCTCAatat > 6:84382/1‑147 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCt > 8:43923/1‑147 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCACCTCCAAGCAACAAGCCTCAAGATAtgt > 7:139874/1‑147 (MQ=255) tccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCtgt > 6:184871/1‑146 (MQ=255) tccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCtgt > 6:179234/1‑146 (MQ=255) tccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCtgt < 5:184871/146‑1 (MQ=255) tccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCtgt < 5:179234/146‑1 (MQ=255) ggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACt < 6:15735/145‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCGCTGTa > 2:277554/1‑147 (MQ=255) ccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTa > 6:67788/1‑145 (MQ=255) ggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAg > 1:71604/1‑147 (MQ=255) ggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAg > 4:342990/1‑147 (MQ=255) atatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAG‑Cgg < 1:262377/147‑1 (MQ=255) atatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAG‑Cgg < 1:239277/147‑1 (MQ=255) taCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCCCTCGGACACACAATCCGGAAGATGGGTGGGATGTAGGGG‑CGGGTTTa > 8:240405/1‑147 (MQ=255) aCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAG‑CGGGTTTa < 7:43923/146‑1 (MQ=255) cTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCCCGGCTAACCACATGCCTAAAGATCTGTGGACTGTAGGAGCCGGGTTAAccc > 3:180683/1‑147 (MQ=255) tttATAAAATTTTTATGAACTAACTTTTTGTAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAATATCTGTGCACTGTAGGAG‑CGGGTTTACCCGCGAAAg < 6:80053/146‑1 (MQ=255) aaaTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GTTAAACACGATCATAAAAACATGAATCAAGATCTGTGCACTGTAGGAT‑AGGGTTTACCCGCTAAAGGTCCgt > 7:259306/1‑145 (MQ=255) tttttATTAACTAACTTTTTGTAATATTTATAGACGGGGGATTTGTTACAGAGGTCCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAATATCTGTGCACTGTAGGAG‑CGGGTTTACCCGCGAAAGGGCCGGAACa < 2:334148/147‑1 (MQ=39) ttATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAG‑CGGGTTTACCCGCGAAAGGGCCGGAACAgg < 1:269400/146‑1 (MQ=255) aactaactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTACTACACAAAATGCTAAAGATATGTGCACTGTAGGAG‑CGGGTTTACCACCGAAAGGGCCGGTAAAGCTTTaaa > 1:206159/1‑145 (MQ=255) ataactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAG‑CGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTc < 2:11224/145‑1 (MQ=255) atgggttaTTTTTTACAGCGGTGCGGGGTTCTTCGCGTGAA‑AACCGGCTCCTACACACATCCATCAAGTTTTGACCAGTTTCGCTG‑GGTGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACt < 2:206159/139‑1 (MQ=255) gTTACAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAG‑CGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACt > 1:261420/1‑147 (MQ=255) tACAGAGGGGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACCCATGCCTCAAGATCTGTGCACTGTAGGAG‑CGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTg < 7:272027/146‑1 (MQ=255) aCAGAGGTGCCGGGCTCTTCGCG‑GGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGcc > 6:272820/1‑147 (MQ=255) | TACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCG‑GGT‑AACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAG‑CGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCC > NC_002947/278602‑278862 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |