New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 726896 = | 31 (0.450) | 3 (0.050) | 3/258 | 4.4 | 7.1% | intergenic (‑143/+124) | PP_0620/PP_0621 | GntR family transcriptional regulator/hypothetical protein |
? | NC_002947 | 726983 = | 50 (0.800) | intergenic (‑230/+37) | PP_0620/PP_0621 | GntR family transcriptional regulator/hypothetical protein | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
CCCACCTGCAGCAGGGCCCTGGCCACCAAGGCTGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/727054‑726896 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTGGCTGCAATACCACTCATTGCCCTGCTGCAGCGCCCGGTCGTTGGGCAGGTGCACGCCGCAATGG > NC_002947/726983‑727122 CCCACCTGCAGCAGGGCCCTGGCCACCAAGGCTGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGC < 5:138726/147‑1 CCTGCAGCAGGGCCCTGGCCACCAAGGCTGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGC > 8:184063/1‑147 CCTGCAGCAGGGCCCTGGCCACCAAGGCTGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCGAACCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCG > 4:128240/1‑146 TGCAGCAGGGCCCTGGCCACCAAGGCTGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTC < 8:230252/147‑1 CAGGGCCCTGGCCACCAAGGATGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCCAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCCCGGGCACGCCCGCTCCaaaa > 6:352503/1‑143 AGGGCCCTGGCCACCAAGGCTGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAG < 7:302114/147‑1 GCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGG > 6:92302/1‑147 CGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTGGCT > 7:31480/1‑147 AAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTGGCTGCAA < 5:92302/147‑1 CCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTGGCTGCAATACCACTCATT > 5:227606/1‑107 CCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTGGCTGCAATACCACTCATT < 6:227606/107‑1 CCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTGGCTGCAATACCACTCATTGCCCTGCTGCAGCGCCCGGTCGTTGGGCAGGTGCACGCCG > 3:70603/1‑146 gccCCCACATAATTCGTATTGGGTTCACGATTGCACAGACCTCGTGTTCACCCTTTGTGGCCACGGCCCTGCTGCAGGTGGGCCTGGCTGCAATACCACTCATTGCCCTGCTGCAGCGCCCGGTCGTTGGGCAGGTGCACGCCGCAA < 5:66439/144‑1 GCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTGACTGCAATACCACTCATTGCCCTGCTGCAGCGCCCGGTCGTTGGGCAGGTGCACGCCGCAA < 8:302114/147‑1 TCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTGGCTGCAATACCACTCATTGCCCTGCTGCAGCGCCCGGTCGTTGGGCAGGTGCACGCCGCAATG < 7:230252/147‑1 CCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTGGCTGCAATACCACTCATTGCCCTGCTGCAGCGCCCGGTCGTTGGGCAGGTGCACGCCGCAATGG > 5:37561/1‑146 CCCACCTGCAGCAGGGCCCTGGCCACCAAGGCTGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/727054‑726896 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTGGCTGCAATACCACTCATTGCCCTGCTGCAGCGCCCGGTCGTTGGGCAGGTGCACGCCGCAATGG > NC_002947/726983‑727122 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |