New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4953692	80 (1.160)	4 (0.060)	4/276	4.2	5.3%	coding (740/1692 nt)	PP_4363	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4953758	66 (0.990)					coding (674/1692 nt)	PP_4363	two‑component system sensor histidine kinase/response regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4953542‑4953692 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaTGACCGCCAAGGGCTACGGCATGGCGCAGATCCTGCGCGAGATGAATGCCAAGCTCAAGCGCATCCTGCCGGTGGATATGTTCTGCTGTGCGCTGCTGCTCAATCTCAGCATGCAGCGCGGCTCGGTGGAGGTGTGGAATGGC  <  NC_002947/4953758‑4953616                                                                                                                                                                                                                                                                                                        AGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACC                                                                                                                                                     >  7:156552/1‑147   CGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCG                                                                                                                                                    >  7:188863/1‑146    GGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGC                                                                                                                                                  <  5:275574/147‑1             CGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCATGACCGC                                                                                                                                          >  6:107015/1‑146                                                                       TACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCAACGGCATGACCGCCAAGGGCTACGGCATGGCGCAGATCCTGCGCGAGATGAATGCCAAGCTCAAGCGCATCC                                                                               >  3:102481/1‑147                                                                             CATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCATGACCGCCAAGGGCTACGGCATGGCGCAGATCCTGCGCGAGATGAATGCCAAGCTCAAGCGCATCCTGCCGG                                                                         <  4:102481/147‑1                                                                                          CACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCATGACCGCCAAGGGCTACGGCATGGCGCAGATCCTGCGCGAGATGAATGCCAAGCTCAAGCGCATCCTGCCGGTGGATATGTTCTG                                                            <  5:107015/147‑1                                                                                                                                                    GGCATGACCGCCAAGGGCTACGGCATGGCGCAGATCCTGCGCGAGATGAATGCCAAGCTCAAGCGCATCCTGCCGGTGGATATGTTCTGCTGTGCGCTGCTGCTCAATCTCAGCATGCAGCGCGGCTCGGTGGAGGTGTGGAATGGC  <  5:136108/147‑1                                                                                                                                                    GGCATGACCGCCAAGGGCTACGGCATGGCGCAGATCCTGCGCGAGATGAATGCCAAGCTCAAGCGCATCCTGCCGGTGGATATGTTCTGCTGTGCGCTGCTGCTCAATCTCAGCATGCAGCGCGGCTCGGTGGAGGTGTGGAATGG   <  2:258345/146‑1                                                                                                                                                    GGCATGACCGCCAAGGGCTACGGCATGGCGCAGATCCTGCGCGAGATGAATGCCAAGCTCAAGCGCATCCTGCCGGTGGATATGTTCTGCTGTGCGCTGCTGCTCAATCTCAGCATGCAGCGCGGCTCGGTGGAGGTGTGGAATGG   <  3:271874/146‑1                                                                                                                                                    GGCATGACCGCCAAGGGCTACGGCATGGCGCAGATCCTGCGCGAGATGAATGCCAAGCTCAAGCGCATCCTGCCGGTGGATATGTTCTGCTGTGCGCTGCTGCTCAATCTCAGCATGCAGCGCGGCTCGGTGGAGGTGTGGAATGG   <  6:87991/146‑1                                                                                                                                                                                                                                                                                                        AGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4953542‑4953692 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaTGACCGCCAAGGGCTACGGCATGGCGCAGATCCTGCGCGAGATGAATGCCAAGCTCAAGCGCATCCTGCCGGTGGATATGTTCTGCTGTGCGCTGCTGCTCAATCTCAGCATGCAGCGCGGCTCGGTGGAGGTGTGGAATGGC  <  NC_002947/4953758‑4953616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.