New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	564368 =	34 (0.490)	4 (0.060)	4/266	4.1	10.7%	intergenic (+20/‑153)	rplQ/katA	50S ribosomal protein L17/catalase
	?	NC_002947	564393 =	35 (0.550)					intergenic (+45/‑128)	rplQ/katA	50S ribosomal protein L17/catalase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CACCCGTCAGGGCGGCTACCTGCGCATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGAAGACCGAAAT  >  NC_002947/564225‑564511                                                                                                                                                |                                                                                                                                                cACCCGTCAGGGCGGCTACCTGCGCATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGaaaa                                                                                                                                              >  2:201281/1‑147 (MQ=255)         aGGGCGGCTACCTGCGCATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGc                                                                                                                                        >  2:218430/1‑145 (MQ=255)           ggcggcTACCTGCGCATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGTCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAg                                                                                                                                    <  7:359125/147‑1 (MQ=255)           ggcggcTACCTGCGCATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAg                                                                                                                                    >  3:206434/1‑147 (MQ=255)                 tACCTGCGCATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCg                                                                                                                              <  5:207216/147‑1 (MQ=255)                  aCCTGCGCATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCgg                                                                                                                             >  1:21567/1‑147 (MQ=255)                        gcATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTTCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGtttttt                                                                                                                       <  7:357294/147‑1 (MQ=255)                        gcATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGttttt                                                                                                                        <  1:201281/146‑1 (MQ=255)                              tGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACAGGGCCTAGTGCCCGGTTTTTTGTTtat                                                                                                                 >  7:55571/1‑147 (MQ=255)                                aaGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATAc                                                                                                               >  3:231195/1‑147 (MQ=255)                                        tttCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTg                                                                                                       >  7:226475/1‑147 (MQ=255)                                              cgcTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGAGCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTAtt                                                                                                 <  2:257/147‑1 (MQ=255)                                              cgcTGGCGACAACGCGCCGATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTAtt                                                                                                 <  8:205746/147‑1 (MQ=255)                                                cTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTc                                                                                               <  3:233767/147‑1 (MQ=255)                                                    cGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTAtt                                                                                           <  2:21567/147‑1 (MQ=255)                                                      aCAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGa                                                                                         >  2:9938/1‑147 (MQ=255)                                                          cgcgCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTa                                                                                     <  8:18445/147‑1 (MQ=255)                                                                  tGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTa                                                                                             >  7:36611/1‑131 (MQ=255)                                                                              aGCTGGTTGATCGTCCGTTCGGCGGTGCTGTAGAAGCTGCTTAGGAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGt                                                                  <  8:226475/146‑1 (MQ=255)                                                                                    ttGATCGTCCGGTCGGAGGTGCTGTAGAAGCTTCTGAGTAATAAGTTCTGTCTTCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGt                                                            <  5:371517/146‑1 (MQ=255)                                                                                                   gcggTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAAt                                            <  2:224240/147‑1 (MQ=255)                                                                                                      gTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAAt                                                         >  2:207968/1‑131 (MQ=255)                                                                                                      gTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAAt                                                         <  1:207968/131‑1 (MQ=255)                                                                                                        gCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATActct                                       >  1:368603/1‑147 (MQ=255)                                                                                                             aGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATActctctct                                   <  4:231195/146‑1 (MQ=255)                                                                                                             aGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAAAActctctct                                   >  7:147884/1‑146 (MQ=255)                                                                                                               aaGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACa                                >  6:6694/1‑147 (MQ=255)                                                                                                               aaGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACa                                >  5:114392/1‑147 (MQ=255)                                                                                                                         gTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAAAACTCTCTCTACAGCCGATTAGc                      <  8:147884/147‑1 (MQ=255)                                                                                                                             gACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGc                  >  7:72454/1‑147 (MQ=255)                                                                                                                              aCGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGcc                 >  6:138304/1‑147 (MQ=255)                                                                                                                                        tgCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGAAGAc        >  7:303995/1‑146 (MQ=255)                                                                                                                                         gCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATGTATTGTTTATTTCAATTGATGTAAGTCATGAAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACACTCTCTACAGCCGAATAGCCGGCCCTAGAAGAcc       >  8:14966/1‑146 (MQ=255)                                                                                                                                             cAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGGATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGAAGACCGAAAt  >  2:172711/1‑147 (MQ=255)                                                                                                                                                |                                                                                                                                                CACCCGTCAGGGCGGCTACCTGCGCATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGCCTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGAAGACCGAAAT  >  NC_002947/564225‑564511

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.