New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1835105	33 (0.480)	4 (0.060)	4/268	4.1	9.4%	coding (454/495 nt)	PP_1639	SprT family protein
	?	NC_002947	= 1835165	46 (0.710)					coding (394/495 nt)	PP_1639	SprT family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGGGGCAGCGCACGTCTCGGGAATTGTACGACCCCCGATCTATTCGACCCGCGTCTCGCCGCTGTACACCAGGACTTCCCGGCACCGCTTGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAGCTGCCACTCTTCACCATGGGCCTGGATG  >  NC_002947/1835024‑1835310                                                                                                                                               |                                                                                                                                                        gcgGGGCAGCGCACGTCTCGGGAATTGTACGACCCCCGATCTATTCGACCCGCGTCTCGCCGCTGTACACCAGGACTTCCCGGCACCGCTTGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACgg                                                                                                                                                      <  6:279259/145‑1 (MQ=255)          cgcACGTCTCGGGAATTGTACGACCCCCGATCTATTCGACCCGCGTCTCGCCGCTGTACACCAGGACTTCCCGGCACCGCTTGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCttt                                                                                                                                           <  2:328192/147‑1 (MQ=255)            cccggctcGGGAATTGTACGTCCCCCGATCTGCTCGACCCGCGTCGCGCCGCTGTACACCAGGACTTCCCGGCACCGCTGGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGc                                                                                                                                         <  4:43697/142‑1 (MQ=255)            cACGTCTCGGGAATTGTACGACCCCCGATCTATTCGCCCCGCGTCTCGCCGCTGTACACCAGGACTTCCCGGCACCGCTTGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGc                                                                                                                                         >  7:218824/1‑147 (MQ=255)             aCGTCTCGGGAATTGTACGACCCCCGATCTATTCGACCCGCGTCTCGCCGCTGTACACCAGGACTTCCCGGCACCGCTTGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGcg                                                                                                                                        <  4:162113/147‑1 (MQ=255)                               gACCCCCGATCTATTCGACCCGCGTCTCGCCGCTGTACACCAGGACTTCCCGGCACCGCTTGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGa                                                                                                                  >  2:256287/1‑147 (MQ=255)                                      gATCTATTCGACCCGCGTCTCGCCGCTGTACACCAGGACTTCCCGGCACCGCTTGCACAGGTATCCCGCGCCCTTGGTGCCCCAGATTGGGCCGCTGCGCGGTAAACGGGAATGCGGTTTGCGGGAACGGGCAGCG‑‑GT‑‑AGATGTCG‑‑c                                                                                                          >  1:309960/1‑147 (MQ=255)                                            ttCGACCCGCGTCTCGCCGCTGTACACCAGGACTTCCCGGCACCGCTTGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCAc                                                                                                   >  5:115425/1‑147 (MQ=255)                                             tCGACCCGCGTCTCGCCGCGGTACACCAGGACTTCCCGGCACCGCTTGCACAGGGATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑Cgg                                                                                                        <  8:247851/141‑1 (MQ=255)                                                  ccGCGTCTCGCCGCTGTACACCAGGACTTCCCGGCACCGCTTGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTgcgcg                                                                                             >  7:116070/1‑147 (MQ=255)                                                  ccGCGTCTCGCCGCTGTACACCAGGACTTCCCGGCACCGCTTGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTgcgcg                                                                                             <  1:275984/147‑1 (MQ=255)                                                       tctcGCCGCTGTACACCAGGACTTCCCGGCACCGCTTGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGtt                                                                                        <  7:17900/147‑1 (MQ=255)                                                                tGTACACCAGGACTTCCCGGCACCGCTTGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCAt                                                                               <  5:186505/147‑1 (MQ=255)                                                                     acCAGGACTTCCCGGCACCGCTTGCACAGGTATCGC‑C‑CCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTtgt                                                                         <  6:351441/147‑1 (MQ=255)                                                                      ccAGGACTTCCCGGCACCGCTTGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTCGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTtgt                                                                         <  2:58613/147‑1 (MQ=255)                                                                       cAGGACTTCCCGGCACCGCTTGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTtgtg                                                                        <  4:111028/147‑1 (MQ=255)                                                                              tCCCGGCACCGCTTGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGa                                                                 >  3:16108/1‑147 (MQ=255)                                                                                     aCCGCTTGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGggcg                                                          <  1:281453/147‑1 (MQ=255)                                                                                             cacaGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTc                                                   >  6:1211/1‑146 (MQ=255)                                                                                              acaGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCAt                                                 <  3:362416/147‑1 (MQ=255)                                                                                                     tCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCGATGTGGAGGTGAAGGAAGGCTCACTCCGCGCCGTTGCACTTCATTGTGGTGGCAAGTATTGGGCGGAAGTTCATa                                                >  1:314167/1‑147 (MQ=255)                                                                                                          cgccCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTtgtg                                                                        >  2:359647/1‑113 (MQ=255)                                                                                                          cgccCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTtgtg                                                                        <  1:359647/113‑1 (MQ=255)                                                                                                          cgccCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTCCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCgcgc                                      >  7:207488/1‑147 (MQ=255)                                                                                                           gccCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCa                                     >  3:114902/1‑147 (MQ=255)                                                                                                             ccTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATg                                   >  1:204714/1‑147 (MQ=255)                                                                                                               ttGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGa                                  >  1:296724/1‑146 (MQ=255)                                                                                                               ttGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGAt                                 <  1:256287/147‑1 (MQ=255)                                                                                                               ttGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑AGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATAAACCACGCGCATGa                                  >  3:157862/1‑146 (MQ=255)                                                                                                                  gTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAg                              >  2:372811/1‑147 (MQ=255)                                                                                                                  gTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAg                              >  1:82645/1‑147 (MQ=255)                                                                                                                  gTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAg                              >  7:217308/1‑147 (MQ=255)                                                                                                                     cACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAGCTg                           >  5:31800/1‑147 (MQ=255)                                                                                                                      aCCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAGCTg                           >  1:245102/1‑146 (MQ=255)                                                                                                                        cAGCTTGTGCAGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGCGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCTACGTTAGGGCGGCAGTTCATACACCCCGCGCATGATCAGCTGGCa                        >  8:279922/1‑147 (MQ=255)                                                                                                                             tgtgCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAGCTGCCActct                    >  3:95906/1‑146 (MQ=255)                                                                                                                               tgCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCcg                                         <  8:38239/123‑1 (MQ=255)                                                                                                                               tgCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCcg                                         >  7:38239/1‑123 (MQ=255)                                                                                                                                gCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAGCTGCCACTCTTCa                 <  1:26535/146‑1 (MQ=255)                                                                                                                                 ccGCTGCGCGGTAAACGGGAAGTTGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAGCTGCCACTCTTCAcc               >  1:136772/1‑147 (MQ=255)                                                                                                                                     tGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGTCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAGCTGCCACTCTTCACCATgg           >  8:156512/1‑147 (MQ=255)                                                                                                                                     tGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAGCTGCCACTCTTCACCATgg           >  2:385658/1‑147 (MQ=255)                                                                                                                                        gcgGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAGCTGCCACTCTTCACCATggg          <  5:1211/145‑1 (MQ=255)                                                                                                                                        gcgGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAGCTGCCACTCTTCACCATGGGcc        <  7:156512/147‑1 (MQ=255)                                                                                                                                            tAAAAGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGAGGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAGCTGCCACTCTTCACCATGGGCCTGGa    <  2:314167/147‑1 (MQ=255)                                                                                                                                             aaaCGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAGCTGCCACTCTTCACCATGGGCCTGGAt   <  6:268397/147‑1 (MQ=255)                                                                                                                                               aCGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAGCTGCCACTCTTCACCATGGGCCTGGATg  <  2:296724/146‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                        GCGGGGCAGCGCACGTCTCGGGAATTGTACGACCCCCGATCTATTCGACCCGCGTCTCGCCGCTGTACACCAGGACTTCCCGGCACCGCTTGCACAGGTATCGC‑CGCCCTTGGTGCACCAGCTTGTGCCGCTGCGCGGTAAACGGGAAGTCGCTTTGCGGGCACGGGCAGCG‑‑GT‑‑AGATGTAG‑‑CGGGTCACTGCGCGCCGTTGCACGTCATAGTTGTGGCAACGATTGGGCGGCAGTTCATACACCCCGCGCATGATCAGCTGCCACTCTTCACCATGGGCCTGGATG  >  NC_002947/1835024‑1835310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.