| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,559 | 0 | C | A | 35.6% | 106.5 / 91.1 | 89 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (32/24); new base A (12/19); total (45/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.20e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.07e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCA > NC_002947/195417‑195704 | cGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACcggcg > 3:257389/1‑147 (MQ=32) gtgaccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAAt > 7:6626/1‑147 (MQ=35) tgaccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACACCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAAAGCC‑ACCCGCGGTAAta > 3:172068/1‑146 (MQ=255) gaccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAAttt < 3:133965/147‑1 (MQ=35) gaccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAAttt < 2:282468/147‑1 (MQ=35) ccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGCCCGTCAGCGTCACCCTCCAGAACGCC‑ACCGGCGGTAATTTCg > 4:30022/1‑147 (MQ=255) ccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTc < 3:2977/146‑1 (MQ=34) ccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCg < 6:234630/147‑1 (MQ=34) ccgtgaccCTGTCCAACGGCCAGGGCATAACTGTTGAAGCCTGAAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCg < 7:313549/147‑1 (MQ=11) cTGTCCAACGGCCAGGTCAACACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCACCTg > 2:303498/1‑147 (MQ=255) cTGTCCAACGGCCACTTCATCACTGTTGAAGCCGGCAAAACCCATGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTg < 4:79116/147‑1 (MQ=11) tGTCCAACGGCCATCTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGa < 6:327716/147‑1 (MQ=255) gCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATc < 4:257389/147‑1 (MQ=40) cAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCg > 7:71841/1‑147 (MQ=255) tcatcaCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGCTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAccc > 2:254594/1‑147 (MQ=255) atcaCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCg > 1:133368/1‑147 (MQ=255) tcaCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAATTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGa < 3:82188/129‑1 (MQ=255) tcaCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAATTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGa > 4:82188/1‑129 (MQ=255) gTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAg > 2:350454/1‑147 (MQ=37) tGAAGCCGGCAAAACCCTGGGCAGCGTCGATTTCCAGACCCGGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAc < 7:345893/147‑1 (MQ=255) tGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACACCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGa > 3:118154/1‑146 (MQ=255) aaGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAcc < 8:15361/146‑1 (MQ=37) aaGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCCAGAACGCC‑CCCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGCCTCAGACCa > 3:115736/1‑147 (MQ=255) aGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCa > 3:242195/1‑146 (MQ=37) ccGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGa < 3:30022/147‑1 (MQ=37) tcAAAACCCAGGGCAGCGTCGAATTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCa < 1:360237/146‑1 (MQ=37) taaaaCCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCg > 4:299002/2‑104 (MQ=14) cAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCaa > 1:128179/1‑147 (MQ=37) cAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCaa > 7:298130/1‑147 (MQ=37) cAAAACCCAGGGCAGCGTCGATTTCCACACCCCGGCCAATGCCGGCTACAACCACGGGTCGCCCGTCAGCGGCACCATCGCGAACGCCTTCCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCa < 1:303498/147‑1 (MQ=11) aCCCAGGGAAGCGGCGATTTCCAGACCCCGGCCAATGACGGCTACAACACCGTTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGAc < 2:326272/147‑1 (MQ=11) gCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCg < 2:133368/147‑1 (MQ=34) gTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGAcacc > 5:134665/1‑147 (MQ=38) aGACCCCGGCCAATGACGTCTACATCTACGGTTCGAACGTCAGCGTCACGATCGAGAACGCC‑ACCGGCGGTAATTTGGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACcgcg < 5:167896/146‑1 (MQ=14) aGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGa > 5:304933/1‑147 (MQ=39) gACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTAAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGAc < 1:254594/147‑1 (MQ=255) gACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGCTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCACAGACCA‑CGAACAACGCCTCGGTCGACACCCCCACCCCGa > 5:291380/1‑146 (MQ=14) cccGGCCAATGACGTCTACAACAACGGATCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGAAAATTCGAACAACAGACCCCGAAACCGACCCCGGCTCAGACCA‑CGATCAACGACTCCGACGACACCACCACCGCGAccc > 6:263321/1‑146 (MQ=11) ccAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACgg < 4:242195/147‑1 (MQ=38) cAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGc > 5:40533/1‑147 (MQ=38) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGcc < 4:371676/146‑1 (MQ=17) tCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGCCCCTGACGGCGAGCCCGt > 6:302655/1‑147 (MQ=37) tCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCATCGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCg < 1:95780/147‑1 (MQ=255) cTACAACAACGGTTCGACCGTCAGCGTCACCATCTAGAACGCC‑ACCGGCTGTAATTTCGAGCAACTGAGCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTc < 4:172068/147‑1 (MQ=255) tACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCg > 7:95597/1‑147 (MQ=17) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGt < 3:155672/146‑1 (MQ=17) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTc < 3:307063/147‑1 (MQ=17) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTc > 3:140951/1‑147 (MQ=17) acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 2:36364/1‑147 (MQ=17) acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCa < 4:172840/147‑1 (MQ=17) acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCAAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCa < 7:98060/147‑1 (MQ=12) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGa > 4:350689/1‑127 (MQ=38) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGa < 3:350689/127‑1 (MQ=38) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 4:182071/1‑146 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGCCCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 6:211618/1‑146 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 2:211793/1‑146 (MQ=37) ggctCGACCGTCAGAGTCACCATCGAGACCGCC‑ACAGCCGGAAATTTCGAGCAACTCACCCCGACTCCGACCCCGGCTCATACCC‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACCGCGAGCCCGTCGGTCACCGaa < 7:237226/144‑1 (MQ=11) gTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg < 1:211793/147‑1 (MQ=37) ttCGACCGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgg > 4:348911/1‑147 (MQ=17) tCGACCGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggc < 8:279907/147‑1 (MQ=17) gACCGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcgg > 5:16999/1‑147 (MQ=17) aCCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 8:71841/147‑1 (MQ=37) aCCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcgg < 7:217611/146‑1 (MQ=37) aCCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGACCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc > 5:320865/1‑147 (MQ=37) aCCGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACAGAACACGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGACCCCGTCGGTCACCGAAggcggc > 3:367198/1‑147 (MQ=11) ccGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGCCTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 7:10933/1‑147 (MQ=37) cGTCAGCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 6:166223/147‑1 (MQ=17) gCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATc < 3:348911/146‑1 (MQ=17) gCGTCACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACCCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 5:79049/147‑1 (MQ=12) gTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc > 8:220357/1‑146 (MQ=37) cACCATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa < 1:44297/147‑1 (MQ=17) ccATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTaca > 6:133763/1‑147 (MQ=39) ccATCGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGGTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTaca > 5:59784/1‑147 (MQ=12) cATCGAGAACGCC‑ACAGGCGGTAATTTCTAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTacac < 5:206366/147‑1 (MQ=12) aTCGAGAGCGCC‑ACTGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGa > 4:46270/1‑125 (MQ=25) aTCGAGAGCGCC‑ACTGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGa < 3:46270/125‑1 (MQ=25) aTCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc > 6:114371/1‑147 (MQ=39) aTCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc > 6:113507/1‑147 (MQ=39) tCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCCCCGAAGGCGGCGTGATCACTTACACCg > 2:65363/1‑147 (MQ=255) cGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 7:70740/1‑147 (MQ=39) cGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCg < 6:218556/112‑1 (MQ=12) cGAGAACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCg > 5:218556/1‑112 (MQ=12) agaACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa < 2:128179/147‑1 (MQ=39) gaACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAc < 6:301027/57‑1 (MQ=35) gaACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAc > 5:301027/1‑57 (MQ=35) gaACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAGCA‑CGATCCACGACTCGGTCGACACCACTAACGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAc > 1:83357/1‑147 (MQ=11) gaACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTg < 3:168141/130‑1 (MQ=17) gaACGCC‑ACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTg > 4:168141/1‑130 (MQ=17) gCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTg < 5:133763/147‑1 (MQ=39) gCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTg < 8:298130/147‑1 (MQ=39) c‑acaGGCGGTAATTTCGAGCAACTGACCCCGAAACCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTa < 7:215539/132‑1 (MQ=12) ccGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCa < 1:350454/147‑1 (MQ=38) | CGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCC‑ACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCA‑CGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCA > NC_002947/195417‑195704 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |