| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,390 | 0 | T | C | 27.9% | 111.1 / 55.9 | 79 | D632D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (30/27); new base C (10/12); total (40/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.03e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCAC > NC_002947/196244‑196536 | cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑At > 8:262009/1‑147 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGTCGTGATCACTTCCACCGTGCCCCTCCCCACTCCAGCCCAGACGCCGGTGACAGTCAACCTGTCCAACGGCCAACCCATTACCGTTGAAGCCGGCAATACCCA‑GGGCAGCGACG‑Cttt > 7:147424/1‑146 (MQ=11) cGGCGTGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑Actt < 6:73183/145‑1 (MQ=11) cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTTCACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTc < 8:102267/146‑1 (MQ=11) cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑Actt < 8:23303/145‑1 (MQ=255) cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTc < 3:81361/146‑1 (MQ=255) tgCCCGTCGGTGAGCGAAGGGGGCGTGTTCACTTACACCGTCTCGCTCAGCAACCCTGCCGAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTAGCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGAc < 2:336568/145‑1 (MQ=11) aGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGAcc > 3:306381/1‑147 (MQ=255) gCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGAc > 1:336568/1‑145 (MQ=255) gTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGaa < 8:355782/146‑1 (MQ=255) cACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGAATGa < 6:86374/147‑1 (MQ=255) ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACg > 3:310983/1‑147 (MQ=34) ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCCGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACg < 4:140951/147‑1 (MQ=21) ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGAATGACg < 4:331881/147‑1 (MQ=255) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGAAt > 8:13889/1‑142 (MQ=255) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGAAt < 7:13889/142‑1 (MQ=255) gAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGt > 3:186758/1‑146 (MQ=34) aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGAATGACGTCt < 4:306381/147‑1 (MQ=255) aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCATTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGAATGACGt > 2:332875/1‑145 (MQ=11) aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCATTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGAATGACGt < 1:332875/145‑1 (MQ=11) aGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGAATGACGTCTa < 2:195166/147‑1 (MQ=255) gcggcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGAATGACGTCTaca < 3:175102/147‑1 (MQ=255) cgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTAcaacaa < 5:157298/147‑1 (MQ=34) gATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACgg < 4:186758/147‑1 (MQ=34) tCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 7:253111/1‑147 (MQ=255) tCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 4:265243/1‑147 (MQ=255) cTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCg < 2:221036/146‑1 (MQ=33) cTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 4:252810/147‑1 (MQ=33) cTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGAATGACGTCTACACCAACGGTTCGa > 6:136421/1‑147 (MQ=11) ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc > 4:182893/1‑147 (MQ=255) ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc > 5:136839/1‑147 (MQ=255) cacCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 7:262009/145‑1 (MQ=32) acCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTc < 3:46898/147‑1 (MQ=34) acCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTc < 1:379826/147‑1 (MQ=34) gTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt > 7:288146/1‑147 (MQ=35) gTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGAGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGAATGACGTCTACCACAACGGTTCGACTGTCAgc > 4:247914/1‑146 (MQ=11) cccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa > 5:302243/1‑147 (MQ=37) tGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa > 8:230556/1‑147 (MQ=37) gAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTc > 5:76518/1‑94 (MQ=33) gAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTc < 6:76518/94‑1 (MQ=33) gCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GCGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCAt > 1:261360/1‑145 (MQ=37) gCAATCCTGCCCAGAAGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCAt < 6:239445/145‑1 (MQ=37) tGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACg < 6:302243/146‑1 (MQ=37) gCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGGGTCACAATCGAGAACGcc > 1:326516/1‑147 (MQ=21) cccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCa > 7:336906/1‑147 (MQ=37) ccAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCTTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCg < 3:230528/118‑1 (MQ=11) cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCAcc > 6:219185/1‑147 (MQ=38) aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAACACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGGGTCACCATCGAGAACGCCACcg > 1:42270/1‑147 (MQ=18) aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcg > 5:247908/1‑147 (MQ=38) aCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggc < 8:288146/147‑1 (MQ=39) cGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 2:102951/112‑1 (MQ=32) cGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 1:102951/1‑112 (MQ=32) ccGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCCCCATCGAGAACGCCCCcggcgg > 7:283643/1‑146 (MQ=255) ccGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcgg > 5:276275/1‑146 (MQ=39) cGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTa < 7:230556/147‑1 (MQ=39) gtaaCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTa > 5:349814/4‑95 (MQ=18) tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTa > 5:370853/1‑144 (MQ=39) tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTa < 6:370853/144‑1 (MQ=39) cAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GCGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTc < 2:261360/146‑1 (MQ=38) gTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGATTGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa > 6:185789/1‑146 (MQ=37) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGGCAGCGTCG‑ATTTCCAGCCCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCACCt > 1:90793/1‑147 (MQ=255) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTGCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAccc < 8:336906/146‑1 (MQ=37) aCGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTac < 5:32718/77‑1 (MQ=21) cGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa < 6:276275/147‑1 (MQ=37) aCCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGa > 8:316165/1‑145 (MQ=39) aCCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGa < 7:316165/145‑1 (MQ=39) actgTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTacaa < 5:126488/62‑1 (MQ=1) actgTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTacaa > 6:126488/4‑65 (MQ=1) gAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGAcc > 6:42213/1‑147 (MQ=39) aaGCCTGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGa < 4:239336/45‑1 (MQ=255) aaGCCGGCAAAAACCA‑GGGCAGCGTCG‑ATTTCCAGACACCGGCGa > 3:239336/1‑45 (MQ=11) aGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCa > 7:99425/1‑146 (MQ=255) ccGGCAAAACCCA‑GGGCAGCGTCGAATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACg > 1:202707/1‑147 (MQ=255) aaaCCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCAACATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACg > 6:10782/1‑147 (MQ=25) aCCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAAAAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGAc > 1:130519/1‑147 (MQ=255) ccA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTc < 4:310983/147‑1 (MQ=39) a‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCgg < 3:189443/147‑1 (MQ=39) a‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGAGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCgg > 2:199250/1‑147 (MQ=37) gCAGCGTCG‑ATTTCCAGACACCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCg > 3:249496/1‑147 (MQ=255) aGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 5:42213/147‑1 (MQ=39) tCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGcca < 1:242728/147‑1 (MQ=39) aTTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTc < 6:304908/133‑1 (MQ=40) aTTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTc > 5:304908/1‑133 (MQ=40) tttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCcaccac < 2:202707/147‑1 (MQ=39) | CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCG‑ATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCAC > NC_002947/196244‑196536 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |