Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_002947 | 3,951,159 | T→C | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | cytochrome c/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,951,159 | 0 | T | C | 96.9% | 103.1 / ‑5.5 | 32 | intergenic (‑123/+72) | PP_3486/PP_3487 | cytochrome c/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (24/7); total (24/8) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.50e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGC‑‑GCTCTTATCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTG > NC_002947/3951022‑3951292 | ggTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGC‑‑GCTCCTTTCGCGa < 7:286071/146‑1 (MQ=255) aGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAgg < 1:34471/147‑1 (MQ=255) ttGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCCGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGC‑‑GCTCCGTTCGCGACGCAAGGcc > 7:276126/1‑147 (MQ=255) gccaAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGGGGGGGGGCACGGCGGGGCAGCAGCCCCGGCCGGGGGCGGGCCAGCGGCGCAGGAGGGGGGCGCGGCGC‑‑GGTCCGGTGGCGCCGCAGGGCCggggccc > 6:276344/1‑141 (MQ=255) gccaAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCCAAAGGGCTGCGCCCCCCCCCCCGCATTGGCCGCTCCAGCGCAGAAAGAGGGGAGCGCAGCCC‑‑GCTGCGTTCGCGGCGCCAGGGCGCACCca > 5:349802/1‑147 (MQ=255) aaGCACGCAGGTAATCCATATCGCAAGCCCTGTGGGAGAGGCCGTTCGTACCCAAAGGGCAGCTCCGCAGCCACGGAATGAGCAGCAGCCGCGCCTAAAGAGGGGATGGCTGGGC‑‑GGTACTTTAGCGCCGCAAGGCCGCGcacaca > 8:298365/1‑146 (MQ=255) cGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCATGAGTCGCGAAAGGGCTTCGCAGCAGCCCCGGAAGTGGCAGCACAAACGCAGAAAGAGGGGAGCCCGTCGC‑‑GCGACATTTGCGACCCCAGGGCGCTCACACaaaaca > 6:188388/1‑144 (MQ=255) aggggCCTTGCGTCGCGAAAGGGCTGCGCAGCCGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGCGCGCTGCGC‑‑GCTCCTTTCGCGACGAAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGcc < 8:276126/144‑1 (MQ=38) cTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATg > 3:107440/1‑145 (MQ=255) ttGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATa > 6:243588/1‑147 (MQ=255) cGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTc > 1:181578/1‑147 (MQ=255) gTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTACGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCa > 3:355412/1‑147 (MQ=255) tCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGCTGCCGCAGAGGCCAATTCCCCAGGCGGCCCATGATACTCac > 6:242492/1‑147 (MQ=255) cgAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGGGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCacc > 1:117028/1‑147 (MQ=255) gcagcCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTgg > 5:224977/1‑147 (MQ=255) cccGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCaa < 6:224977/147‑1 (MQ=255) ccGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCa > 7:320113/1‑145 (MQ=255) ggCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAg > 6:204968/1‑147 (MQ=255) cAGTGGCAGCTCACGCGCACAAAGCGGGGCGCGGTGCGC‑‑GCGCTTTGCGCTACTCATGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCt < 2:262412/147‑1 (MQ=255) cAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATgc > 3:4636/1‑147 (MQ=255) cAAGCGCAGAAAGAGGGGAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTgg > 7:254745/1‑147 (MQ=255) cAGAAAGAGGGGAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATc > 2:30035/1‑147 (MQ=255) gAAAGAGGGGAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATcgc > 3:216746/1‑147 (MQ=255) agagGGGAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATcgccg < 8:320113/146‑1 (MQ=255) ggggAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTgg > 7:269910/1‑147 (MQ=255) ggAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTg < 7:186012/130‑1 (MQ=255) ggAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTg > 8:186012/1‑130 (MQ=255) ggAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCg > 1:67916/1‑147 (MQ=255) gAGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCgg > 2:142903/1‑147 (MQ=255) aGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGt > 6:128462/1‑147 (MQ=255) aGCGCTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGt > 5:294806/1‑147 (MQ=255) gcgcTGCGC‑‑GCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTg < 1:30035/147‑1 (MQ=255) | GGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGC‑‑GCTCTTATCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTG > NC_002947/3951022‑3951292 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |