| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,070,248 | +GA | intergenic (+48/+94) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,070,246 | 1 | . | G | 98.9% | 288.7 / ‑5.3 | 88 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); major base G (43/43); minor base A (0/1); total (43/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_002947 | 1,070,246 | 2 | . | A | 97.7% | 282.5 / ‑0.8 | 88 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base A (43/43); total (43/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.95e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGT‑‑GATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTA > NC_002947/1070098‑1070377 || ccTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑tgt < 4:137339/149‑1 (MQ=255)ccTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑tgt < 5:20759/149‑1 (MQ=255) aCGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGT‑‑Gaga < 2:386284/149‑3 (MQ=255) gCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCcgcgc > 7:337131/1‑149 (MQ=255) gCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCcgcgc < 2:13461/149‑1 (MQ=255) aTCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCgcgg > 5:246154/1‑149 (MQ=255) tcGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCTTTAGGCTTTCATCGCC‑TGTGAGATCGAGCGCCGCccgcgcg > 4:258942/1‑149 (MQ=37) ggTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCTTTAGGCTTTCATCGCC‑TGTGAGATCGAGCGCCGCccgcgcg < 3:258942/147‑1 (MQ=37) ggTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCgcgggcg < 6:246154/147‑1 (MQ=255) ggTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCgcggg < 8:360942/145‑1 (MQ=255) gTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGgcggcg < 3:328822/149‑1 (MQ=255) aTGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTc < 5:333066/149‑1 (MQ=255) aTGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTc > 6:333066/1‑149 (MQ=255) tGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGGTTGTTCGTAAGGGGTATGCCTTTAGGCTTTCATCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCG‑CTCg < 3:44232/149‑1 (MQ=25) cTGATCCCGGCATGGCTCGCTGTGCTGGGGGTGGCTTTCCAGCTGACGAAGGCTCGCCAGGCCAAGGGCTGATCGGGGTTGTTCGTAAGGGGGAGGCCGTTAGGTTTTCGGCGCC‑TGTGAGAGCGAGCGCCGCGCGGGCGGCG‑CTCGa < 5:52635/148‑1 (MQ=37) cTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCG‑CTCGAt < 2:127098/149‑1 (MQ=38) tGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAATAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCccgcgcg < 1:359799/139‑1 (MQ=38) tGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGAtc > 7:209818/1‑149 (MQ=255) tGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAAAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCccgcgcg > 2:359799/1‑139 (MQ=38) aTCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGAtctc > 1:63668/1‑149 (MQ=255) cccGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTca > 5:165872/1‑148 (MQ=255) cccGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTca > 1:186381/1‑148 (MQ=255) ccGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTcaca < 2:63668/149‑1 (MQ=255) cGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑tgt‑‑g > 4:309993/1‑112 (MQ=255) cGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑tgt‑‑g < 3:309993/112‑1 (MQ=255) cGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCCCAg > 6:100725/1‑149 (MQ=255) cGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATCCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAg > 8:55420/1‑149 (MQ=255) cGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGCGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAg > 2:238377/1‑149 (MQ=255) tGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGCGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGAt < 1:238377/149‑1 (MQ=255) ctgtgctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGcc > 1:309251/1‑149 (MQ=255) ggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCAt < 2:186381/148‑1 (MQ=255) ggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCAt < 6:165872/148‑1 (MQ=255) ggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCAt < 8:337131/148‑1 (MQ=255) ggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCAt < 8:209818/148‑1 (MQ=255) gtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGc > 6:275034/1‑149 (MQ=255) ggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGt > 2:3223/1‑149 (MQ=255) tttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCG‑CTCGa < 6:291589/113‑1 (MQ=37) tttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCG‑CTCGa > 5:291589/1‑113 (MQ=37) ttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCAt > 3:22460/1‑141 (MQ=255) ttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCAt < 4:22460/141‑1 (MQ=255) tCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTg < 3:282553/147‑1 (MQ=255) gCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCAgggccgc > 3:157119/1‑144 (MQ=38) gCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGCCGCA‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCACACAGCCCATGAAACCCTAAAGGCATGCGTCTGGCGGcc > 6:294074/1‑149 (MQ=38) gCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTGCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGcc < 7:131310/149‑1 (MQ=255) gaagaaGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCgcgggcgg < 5:323871/97‑1 (MQ=38) gaagaaGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCgcgggcgg > 6:323871/1‑97 (MQ=38) aagaagGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGc < 4:11905/122‑1 (MQ=255) aagaagGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGc > 3:200051/1‑130 (MQ=255) aagaagGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGc < 4:200051/130‑1 (MQ=255) agaagGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTCAGGGGGATGCCGGTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGAc < 5:225783/149‑1 (MQ=38) gaagGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGAcg > 5:81391/1‑149 (MQ=255) gaagGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CGCGATCTCACAAGCGATTAAAGCCAAAAGGCATGCGTc > 4:215854/1‑135 (MQ=38) gaagGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGCGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTc < 3:215854/135‑1 (MQ=255) aagGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTCAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGAcgc > 8:319313/1‑149 (MQ=255) ggCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCGTCTCGATCTCACAGGCGATGAAAGCCt < 1:5066/120‑1 (MQ=37) ggCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCt > 2:5066/1‑119 (MQ=255) ggCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGt > 4:66264/1‑149 (MQ=255) gCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGAtc > 7:238812/1‑99 (MQ=37) gCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGAtc < 8:238812/99‑1 (MQ=37) gCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGAtc > 1:161547/1‑99 (MQ=37) gCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGAtc < 2:156597/99‑1 (MQ=37) gCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGAtc > 1:156597/1‑99 (MQ=37) gCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGAtc < 2:161547/99‑1 (MQ=37) gCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGtt > 4:299022/1‑149 (MQ=255) gCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACACTCGATGAAACCCTAAAGCCATGCGTCTGGCGGCCCTGACGCGt > 6:223567/1‑148 (MQ=38) tCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTcc > 7:346557/1‑149 (MQ=255) cAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCtt > 2:115102/1‑149 (MQ=255) aaGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTc < 4:108822/144‑1 (MQ=255) aaGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTc > 3:108822/1‑144 (MQ=255) gtgCTGATCGGGTTTGTTCGTATGGGGTTTGCCGTTATGTTTTCTGCGCC‑TGTGAGATCGAGCGCCGGGCGTGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGc < 5:223567/145‑1 (MQ=37) ggCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATg > 6:193287/1‑112 (MQ=255) ggCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATg < 5:193287/112‑1 (MQ=255) cTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCt > 6:407634/1‑148 (MQ=255) aTCGGCTTTGTTCGTACGGGGTCTGCCGTTATGTTTTCGGCGCC‑TGTGAGATCGTCCGCCGCGCGGGCGGCG‑CTCGATCTCAGAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCa < 3:36076/147‑1 (MQ=37) gTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgctgc < 5:294074/149‑1 (MQ=255) ttCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCg < 6:81391/149‑1 (MQ=255) ttCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCg > 5:242379/1‑149 (MQ=255) aaGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAg > 2:28558/1‑149 (MQ=255) aGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAg < 5:407634/148‑1 (MQ=255) gggTATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcac < 1:99315/149‑1 (MQ=255) tATGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcacgca < 6:147247/149‑1 (MQ=255) aTGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTg > 3:341065/1‑91 (MQ=25) aTGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTg < 4:341065/91‑1 (MQ=25) tGCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGcaca < 6:242379/149‑1 (MQ=255) tGCCGTCAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGcaca < 7:319313/149‑1 (MQ=255) gCCGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAg > 3:298643/1‑149 (MQ=255) cGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgct < 1:51298/126‑1 (MQ=255) cGTTAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgct > 2:51298/1‑126 (MQ=255) gTTAGGTTTTCGGCGCC‑TGTGAGATAGAGCGCCGCGCGGGCGGCG‑CTCGATCTAACAGGCGAAGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACCCCTTCCCCATGCATGCCCCGCAATTCTGCCTCCGCCCAGCACCCACAgtgg > 6:38403/1‑149 (MQ=25) ttAGGTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtggt < 5:275034/149‑1 (MQ=255) gTTTTCGGCGCCTTGTA‑GATCGAGCGCCGCGCGGGCGGCG‑CTGTATCTCACAGGCGATGAAAGCCTAAAGGAATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTa < 7:55420/148‑1 (MQ=39) gTTTTCGGCGCC‑TGTGAGATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATACTGCCTCCGCCAAGCACGCACACTGGTGTa > 2:33748/1‑148 (MQ=38) || CCTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑TGT‑‑GATCGAGCGCCGCGCGGGCGGCG‑CTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTA > NC_002947/1070098‑1070377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |